Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0646 ATGCCTCCAAAGTTCGATCCTTCCCAGGTTGTGGACGTCTATGTCCGAGTGACGGGTGGTGAGGTTGGTGCGGCGAGTTCGCTGGCTCCGAAGATCGGTCCACTGGGTCTTTCTCCAAAGAAGATCGGTGAAGACATCGCCAAGGAGACCGCAAAAGATTGGAAGGGTCTCCGTGTCACCGTGAAGCTGACCGTTCAGAACAGGCAAGCCAAGGTATCGGTGGTGCCGTCAGCCGCTGCGTTGGTTATCAAGGCCCTGAAGGAGCCCGAAAGGGACCGTAAGAAGACAAAGAACATCAAGCACAACGGTAACATCTCACTCGACGACGTCATTGAGATTGCCAAAACCATGCGCCCCAGGTCCATGGCCAAGGATTTGAGCGGAACCGTTAAGGAGATTCTTGGAACTTGTGTTTCTGTTGGATGTTCTCTGTGTATGCTTGTGACTGACTATACCCAATCTCTTCCAGAACTCCTAATCAGTGAGGTGTTGGCCCAGTTCTTGATAGACAGGAGTCAGCGAGTTTCCTCGATCTTTCTTCTGTCCTCTGCTTCGTCTGAATCTAGTCACGAACTAAATCACCATAGAATGGCATCCAACAGGGGTCAGGGCGGAATTCAGCAGCTATTGGCTGCAGAACAAGAAGCTCAACGGATTGTAAATGCTGCGAGAAATGAAAAAATGGCAAGGCTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGAATATCGTGCTCAGGTGGAGTATGAATTCCAAAAGAAATTGGCAGAGAGCAGTGGAGATTCCGGTGCTAATGTGAAGCGGCTTGAGCAAGAGACTGAAACAAAGATCCAGCACCTGAAAACAGAAGCATCAAGAATATCGCAAGATGTTGTTGCCATGCTCCTCAAGCATGTGACAAGTGTGAAAAATTAG 921 0.4897 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKTMRPRSMAKDLSGTVKEILGTCVSVGCSLCMLVTDYTQSLPELLISEVLAQFLIDRSQRVSSIFLLSSASSESSHELNHHRMASNRGQGGIQQLLAAEQEAQRIVNAARNEKMARLKQAKEEAEKEIAEYRAQVEYEFQKKLAESSGDSGANVKRLEQETETKIQHLKTEASRISQDVVAMLLKHVTSVKN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0646 306 FunFam 60S ribosomal protein L12 1 81 - -
Lele16g0646 306 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Lele16g0646 306 Coils Coil 206 255 - -
Lele16g0646 306 SUPERFAMILY Ribosomal protein L11, C-terminal domain 75 143 IPR036769 -
Lele16g0646 306 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Lele16g0646 306 Gene3D - 82 149 IPR036769 -
Lele16g0646 306 FunFam V-type proton ATPase subunit G 197 306 - -
Lele16g0646 306 Gene3D - 1 81 IPR036796 -
Lele16g0646 306 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 202 305 IPR005124 GO:0016471|GO:0046961|GO:1902600
Lele16g0646 306 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele16g0646 306 Pfam Vacuolar (H+)-ATPase G subunit 203 305 IPR005124 GO:0016471|GO:0046961|GO:1902600
Lele16g0646 306 PANTHER 60S RIBOSOMAL PROTEIN L12 1 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele16g0646 306 Gene3D - 196 306 - -
Lele16g0646 306 Pfam Ribosomal protein L11, RNA binding domain 75 143 IPR020783 GO:0003735|GO:0005840|GO:0006412
Lele16g0646 306 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele16g0646 306 CDD Ribosomal_L11 13 142 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0646 Lele-ChrLele16 3604025 3610046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0646 1 144 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 91.667 6.42e-95 276