Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0643 ATGGGTAACATCGGAAGCAGTGGCGCTAACAACAACCGCCGTAGGCACAGCGCAAGTGGCAGAAGGAGCCATCCGCCTCCCCCTACGCCGGTGACCCCACAGCCGGAGATCACAGCCAATCGATTCTTCTATCCTGCTGCTCCGCCCTACCCATCACAATTCCCAAACTCGAATCCTCCGCCGTATTACCAGTACCCAGGTTACTATCCCCCACCGCCAACGACCATGCCGGTTCCTCTGCCACCTCCTTACGATCAACATCATCATATGGGTCCTCATCCACCTATGGACCCAGCATGGATGGGCGGACGTTACCCTTGTGGCCCTGTGATGCCTCCTACGCCCTATGTGGAGCATCAGAAGGCGGTCACGATAAGGAACGATGTTAATATAAAGAAGGAGACTCTGAGGATTGAACCCGATGAAGAAAATCCGGGGCGGTTCCTTGTGGCATTCACATTCGATGCCACTGTGGCCGGGAGCATCACCATACTTTTCTTTGCAAAGGAAGGTGAGGGCTGCATTCTTACGCCGACAATGGAAAACCTTCTAGCACCTGTAACTGTGCACTTCGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACTGGTATAGACTTATCAATATTTGAAGAGTCGGAATTATTAAGAAGTGACAATGAGGTCTACCCTCTAGCAGTGAAGGCAGATGCATACTCTGGTAATCATGAAGGGTCAAATGAAACTCTTACGCCCAGTGCCACGAACTCTCAGATTACCCAAGCGGTCTTTGAGAAAGAGAAAGGAGAGTTCAGGGTGAGGGTAATTAAGCAGATCTTGTGGGTGAATGGAATGAGATATGAGTTGCAGGAGATATATGGTATTGGAAACTCAGTGGAGAATGACTTGGATGGAAATGATCCAGGAAAAGAGTGTGTCATCTGCTTATCGGAGCCTCGGGATACAACTGTTCTTCCCTGTCGACACATGTGCATGTGTAGCGGATGTGCGAAGGTTCTGAGGTTCCAGACAAACAGGTGCCCAATTTGCAGACAGCCAGTCGAGAGGCTTTTGGAGATAAAAGTCAACAACGGGCCTGAAGATACAACGACACAAGCGGGGCAAGATGGCTGTACAGTATAA 1128 0.5027 MGNIGSSGANNNRRRHSASGRRSHPPPPTPVTPQPEITANRFFYPAAPPYPSQFPNSNPPPYYQYPGYYPPPPTTMPVPLPPPYDQHHHMGPHPPMDPAWMGGRYPCGPVMPPTPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGRFLVAFTFDATVAGSITILFFAKEGEGCILTPTMENLLAPVTVHFEQGLGQKFRQPAGTGIDLSIFEESELLRSDNEVYPLAVKADAYSGNHEGSNETLTPSATNSQITQAVFEKEKGEFRVRVIKQILWVNGMRYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNGPEDTTTQAGQDGCTV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0643 375 SMART ring_2 307 345 IPR001841 -
Lele16g0643 375 Pfam Zinc finger, C3HC4 type (RING finger) 305 351 - -
Lele16g0643 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 356 IPR013083 -
Lele16g0643 375 ProSiteProfiles Zinc finger RING-type profile. 307 346 IPR001841 -
Lele16g0643 375 PANTHER MAHOGUNIN 1 366 IPR045194 GO:0061630
Lele16g0643 375 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 306 346 IPR045195 -
Lele16g0643 375 SUPERFAMILY RING/U-box 306 352 - -
Lele16g0643 375 MobiDBLite consensus disorder prediction 1 57 - -
Lele16g0643 375 FunFam probable E3 ubiquitin-protein ligase LOG2 291 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0643 Lele-ChrLele16 3586961 3589474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0643 103 326 C3H Transcription Factor Family AT3G09770 66.379 5.71e-103 306