Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0639 ATGCATAATCTTCTGGGTCTATCATCCGCCATGGTTGCGGTAGGGTGGAGAGGATTGCTCTACGCAATCTCCATTCTCAATCTTGTTTTGGTCTGCCAGCTCGTCCTCCTTCAACCTCTGGTTTCCTCTTTAGAGGGAAAACCTGGAAATGCTGCTGAGTTATTTGAGAGGGTGTCACATAGTATAAAAGTGAAACGTTATACTGAGGCGCTCGATGATTTAAATGCCGCCATTGAAGCTGAACCAACCCTTTCAGAAGCATACCTTCGCCGTGCATCACTTCTTCGTCAAATATGCAGATACAAGGAATCTGAGGGAAGCTACAGCAAGTTTTTGGAGTTGAAACCTGGAAATTCAGCAGCAGCAAAGGAGCTCTCTCAGTTGTTGCAGGCCCAAAGTGCTCTAGAAACGGCTCAGTCATTCTTTGATTCGGGCAACTTTTCAAAATCCTTGGAATACATCAATAAAATTGTACTTGTTTTTTCTCCGGAATGCTCGAAGGCTAAACTTCTCAAAGTAAAGCTGTTGATAGCTGATAAAGACTATGAAGGGGCCATTGCAGAGTCTGGATTCATTCTTAAGGAAGATGATAATAATTTAGAGGCATTGTTGCTCCGAGGGCGTGCATACTATTATTTGGCTGATCATGATGTTGCCATGAGGCATTACCAGAAAGGTCTTCGCCTAGACCCTGAGCACAGTGAACTGAAGAAAGCATATTTTGGATTGAAAAATCTACTGAAAAAGAGTAAAAGTGCTGAAGATAATGTCAATAAGGGTAAATTGCGTGTGGCTGTAGAGGAATTCAAAGCAGCACTGGCAATTGATCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTTTTGGTCAAACTCGGTAGGGGAAAAGATGCTTTGAACAATTGTGATGAAGTTCTTAAGATCAATGAGGAACTCGTTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAACTTTTAACCGAGGATTGGGAGGGAGCTGTTCAAGATCTGAAATCAGCCGCTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCTTTGATGAGGGCTGAAAAAGCTTTAAAGATAAGCAAGCGCAAAGATTACTACAAAATTCTGGGAATTTCAAAAACGTCTTCTATGTCTGAGATAAAACGTTCCTACAAGAAACTTGCTTTGCAATGGCACCCTGATAAGAACGTGGACAACAGGGAAGAAGCAGAGGCTAACTTCCGAGAAATTGCTGCCGCATATGAGGTTCTAAGTGATGAAGATAAACGAACTAGATATGACAGAGGGGAAGACCTTGAAGACATGGGAATGGGTGGGGGAGGCGGAGGTTTCAACCCCTTTGGTGCTGGGGGCCAACCGTTTACCTTTACTTTTGAGGGAGGCTTCCCTGGTGGCGGCTTTGGCGGAGGGTTTCCTGGTGGATTTGGAGGAGGCGGTGGTGGCTTTGAGTTCCATTTTTGA 1485 0.4357 MHNLLGLSSAMVAVGWRGLLYAISILNLVLVCQLVLLQPLVSSLEGKPGNAAELFERVSHSIKVKRYTEALDDLNAAIEAEPTLSEAYLRRASLLRQICRYKESEGSYSKFLELKPGNSAAAKELSQLLQAQSALETAQSFFDSGNFSKSLEYINKIVLVFSPECSKAKLLKVKLLIADKDYEGAIAESGFILKEDDNNLEALLLRGRAYYYLADHDVAMRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNVNKGKLRVAVEEFKAALAIDPNHLAHNVHLHLGLCKVLVKLGRGKDALNNCDEVLKINEELVEALVQRGEAKLLTEDWEGAVQDLKSAAQKSPQDMNIREALMRAEKALKISKRKDYYKILGISKTSSMSEIKRSYKKLALQWHPDKNVDNREEAEANFREIAAAYEVLSDEDKRTRYDRGEDLEDMGMGGGGGGFNPFGAGGQPFTFTFEGGFPGGGFGGGFPGGFGGGGGGFEFHF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0639 494 Gene3D DnaJ domain 370 479 IPR036869 -
Lele16g0639 494 SMART tpr_5 85 118 IPR019734 GO:0005515
Lele16g0639 494 SMART tpr_5 200 233 IPR019734 GO:0005515
Lele16g0639 494 SMART tpr_5 51 84 IPR019734 GO:0005515
Lele16g0639 494 SMART tpr_5 284 317 IPR019734 GO:0005515
Lele16g0639 494 SMART tpr_5 318 351 IPR019734 GO:0005515
Lele16g0639 494 ProSitePatterns Nt-dnaJ domain signature. 415 434 IPR018253 -
Lele16g0639 494 FunFam DnaJ subfamily C member 7 370 478 - -
Lele16g0639 494 Gene3D Tetratricopeptide repeat domain 40 369 IPR011990 GO:0005515
Lele16g0639 494 Coils Coil 408 428 - -
Lele16g0639 494 ProSiteProfiles dnaJ domain profile. 372 438 IPR001623 -
Lele16g0639 494 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Lele16g0639 494 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 494 IPR044620 -
Lele16g0639 494 CDD DnaJ 372 427 IPR001623 -
Lele16g0639 494 FunFam DnaJ domain containing protein 38 369 - -
Lele16g0639 494 PRINTS DnaJ domain signature 410 430 IPR001623 -
Lele16g0639 494 PRINTS DnaJ domain signature 392 407 IPR001623 -
Lele16g0639 494 PRINTS DnaJ domain signature 374 392 IPR001623 -
Lele16g0639 494 PRINTS DnaJ domain signature 430 449 IPR001623 -
Lele16g0639 494 SUPERFAMILY TPR-like 43 367 IPR011990 GO:0005515
Lele16g0639 494 Pfam Tetratricopeptide repeat 64 118 - -
Lele16g0639 494 Pfam Tetratricopeptide repeat 201 233 IPR013105 -
Lele16g0639 494 Pfam DnaJ domain 372 435 IPR001623 -
Lele16g0639 494 SUPERFAMILY Chaperone J-domain 366 475 IPR036869 -
Lele16g0639 494 SMART dnaj_3 371 430 IPR001623 -
Lele16g0639 494 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0639 Lele-ChrLele16 3566737 3570197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0639 368 435 C2H2 Transcription Factor Family AT1G74250 50.000 1.21e-11 65.1