Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0638 ATGCAAATGATGTCTGGCGACCCTTTCTCCTTATCCACTTCCATTGGAGGCTTTGCTCCACAACAAAACCCAACTCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTTTCACCGAAAACTCTCATGGCAACCAACAGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTTCACCGGAGGGGTCACAACCTTCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTCTACATCTGCCCGGAGAAAACGTGCGTCCACCATGATCCATCCAGAGCACTGGGCGACCTCACTGGCATAAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATACGCAGTCCAATCTGACTGGAAAGCTCACACTAAGACTTGTGGAACAAGAGAATACAAGTGCGATTGTGGGAACCTATTCTCCAGAAAGGACAGCTTCATCACACACAGAGCTTTCTGCGACGCATTAGCGGAAGAGAGTGCGAGACTCACCTCGGTTGCTACAAGTCTGAATTTGAAGAACGAAGGGAACACGATGAGCTCGCAACCTAGTCAGCTGGGACTTGAAAACAACGCAGAGTTAATTTCTCAATTCGGTTCTCATGGATTTTGTGCAGATTTCAATGGAATGGGAATGGGTGCGGACCAGCAAAGAGCAAGCTTATCAATGTGGTTGAACCAGGGAAATAACAATGGTCTTGATGTTGGAGGGCTATACGGATCTTCAAGTTGTTCTTCAGGTTTGGGTGAGCATATGGCACAAATGACGAGCCAAGCTAATCATAATGCTTTTGGTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAAACGCTGGACTTCTACTATCAAGTGGGAAAAGGGGTGAAGCTATGTCAAAGCCAGCTTCTCCCCTGTCAGCTACTGCTTTACTTCAGAAAGCAGCTCAGATGGGTTCCACCAGAAGCAGCAATAACAGCAACAATCCCTCTATTTTCAGTGGCACTTTGGGAGTGATGTCGTCGTCTTCTAATTCTCACACGACCACAAATCTCAATGACAACAACAACGCCAATAATAATCCCCAGAATTTTAATTCAACTAGAAGTGCCGAACCAGTGCTAGCAGACAACAACTTTAGCTCGTTCACGCATGCATTGAACGGTCCTAATCTTGACCAGCTCTTGATGCAGACCGGCGCAAAGCAAAGTGAACAGCAAGTGCAATTGAAGCTTTACCCAGGTGGTTCAACAGAACATAATTTAACAAGAGATTTTCTTGGCATGGCCGGTGGCGGTGGAGCCGGGCCTCCTCCTCCGTTTCTGCCGCAAGAGCTGGCAAAGTTTGCGTCCATTGGCTCACCCATGGGTTTAACACAATTCACTGCCAAAAATTGA 1485 0.464 MQMMSGDPFSLSTSIGGFAPQQNPTPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVATSLNLKNEGNTMSSQPSQLGLENNAELISQFGSHGFCADFNGMGMGADQQRASLSMWLNQGNNNGLDVGGLYGSSSCSSGLGEHMAQMTSQANHNAFGGSCNFGMPASNSTNAGLLLSSGKRGEAMSKPASPLSATALLQKAAQMGSTRSSNNSNNPSIFSGTLGVMSSSSNSHTTTNLNDNNNANNNPQNFNSTRSAEPVLADNNFSSFTHALNGPNLDQLLMQTGAKQSEQQVQLKLYPGGSTEHNLTRDFLGMAGGGGAGPPPPFLPQELAKFASIGSPMGLTQFTAKN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0638 494 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele16g0638 494 SMART c2h2final6 64 86 IPR013087 -
Lele16g0638 494 SMART c2h2final6 140 160 IPR013087 -
Lele16g0638 494 SMART c2h2final6 105 135 IPR013087 -
Lele16g0638 494 MobiDBLite consensus disorder prediction 1 22 - -
Lele16g0638 494 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lele16g0638 494 MobiDBLite consensus disorder prediction 1 49 - -
Lele16g0638 494 Gene3D Classic Zinc Finger 118 197 - -
Lele16g0638 494 Gene3D Classic Zinc Finger 42 116 - -
Lele16g0638 494 MobiDBLite consensus disorder prediction 343 398 - -
Lele16g0638 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lele16g0638 494 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lele16g0638 494 FunFam protein indeterminate-domain 12-like 43 111 - -
Lele16g0638 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 466 IPR031140 -
Lele16g0638 494 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Lele16g0638 494 MobiDBLite consensus disorder prediction 23 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0638 Lele-ChrLele16 3562259 3564096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0638 1 482 IDZ Gene Family AT5G03150 47.349 6.39e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0638 zf-C2H2_jaz 7.2e-05 CL0361