Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0636 ATGAGACTGTTGACGAAACCATTTACAAAAGAACATAGATACTCAGAAAGAGTGGAGATTGGAAAGAGACGACAGAAGTCTAAATTGCTTGTGCCAGTGGTACTCCGCAATATATTTTTAAGACCACCCGAGGCAAATGATCATGTTAGCGGAACTCATAATTCTGGGCTGTCAGTGGAGAAAGAGAAAAGGGGCAATAAAAAGAAGGCAAGAAAAAATGGGGATGTAAGGAAAGAGTTTCTTCGTGCTGTGATATATGTTTCAATCTTGAGTTTGAACTCTAGATTGAAACATTATATATCTGCATGTGCTGCTGCCCTATGGCATGTAAGAGCTTCTTGTTACATCCTTTCTAGCGCTCTTGGTCTTGAATCCAACATCTATGATAACTACTGTCAAGATGTTGCTGAGTCAGAGCGCAAGGTGGTCTTCTTTAAATGGAAAGTGGTAATCTATTGTCAGTTATTTGCGGGTCTGCCTTTGACTACGGTGTCTATCCTGATATTGCAAGTGACAGCTATGAGTCATAGGCATTTGTATAGCACATCTCAAATGTTTGAGAGTGATCATGACCAAAGTTGGAATTCTATGCATACTGATCAACAGTATGTGCACCTTGGTAGAGCTAGCACTTCAGAGAATGGTTCTTTTGTTTATCCAGTGGAAAATATGTCTATAGATGGCATTTCTTTTGCCTCTAATTGGAATCCTACTACAATGCCAAATGGGTTTGCATCCTCAAGTCTCAATATTGAAGTACCACCTCATCAATCTGATGCATCAGGCGCTGCTTCTCATGATCATTTTCTGCATTCATCAAGTGCTGCGGCCTTCATTGCGGTTTCTGAAAATTATGCTCATCAGCCTCCTCCTTCTTCCAATTATGTTAGACAGCCATTTCATGTCGTTGATGGTGGTTTTATTGATCTTACAATGGGAGATGGAAGAGGGACTCACAAGCGGAAGAGCCCCGGAATTCCTCCAGTCTGTGAGAGAGGTAGTACAAGCAGATACATAAATGCTGGAAGTTCAACTGATCTTCCAGTGACTTCAGAACTACGGCAGGAGAAGCCAAATATGGATTCTCAATATTTGCCTCGGGATCAAGTTACCATGCCACTCACCTTCAGAGGTAGTGGCCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAATGTGAGAAGCCGTTCTGCACTTGATTTTGAATCCAACCTGGCTAGGACCCATTTATCTGCCAATCATTCACACAACTACTCCACTAGCCTGCCCATTGACCATTCTAGCACAATGGATCTCTCAGGTCAGAGTTCTAGCACATTAACAAGGGATTGGAGCCAAATGAGCACATCTCATGCTCATGGCAGGGTTCTATTACCAGATACAAGTGCTCTTAATTGTGAGCCAATTCCCTTCCTTGTTGGAAGTGGCGGTAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCGTGAATTCGGTACAAGCAGAAATCCTGTTGCACCTCAAAGTTTTCATAATAATCCGACTCAGGCTGCTAGGGGAGTGCGAAGCAACTTTTCACAAAGGTCTACTCCACCTTTTAGATCTTCTTCAAGCTTGCGCTTGGGACATGTAGCGCCTTCAGATGATGGATTGCAAATGGTTGCCGATAATTACTCCTCAAGACATCCAAGGCCATTGACAACCATTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGATATCGACCATTGGCTGATGCACCTAGTCACCACAATCGATTTTCTTCAGAGGGTTTCATGATTGTTGACCGTGGGTTGCCATATGGATCTAGAAGTATGGTTGATCAGCATACGGACATGAGGATGGACATAGAGGACATGAGCTATGAGGAACTACTCGCCCTTGGAGAGATGATTGGTCATGTCAGCACAGGATTGACTGAGGATTTGATTTCAAAATGCATGACAGAGACAATATATTGTTCATGTGAGCAAAGTCAGGAGGAAGGAACTTGTGTAATATGTTTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCAATGAAGAACAAATGTCCAATCTGCAAAGCTTGTGCTCTGCCAGATGATAGGAAGGATAAATAA 2172 0.4296 MRLLTKPFTKEHRYSERVEIGKRRQKSKLLVPVVLRNIFLRPPEANDHVSGTHNSGLSVEKEKRGNKKKARKNGDVRKEFLRAVIYVSILSLNSRLKHYISACAAALWHVRASCYILSSALGLESNIYDNYCQDVAESERKVVFFKWKVVIYCQLFAGLPLTTVSILILQVTAMSHRHLYSTSQMFESDHDQSWNSMHTDQQYVHLGRASTSENGSFVYPVENMSIDGISFASNWNPTTMPNGFASSSLNIEVPPHQSDASGAASHDHFLHSSSAAAFIAVSENYAHQPPPSSNYVRQPFHVVDGGFIDLTMGDGRGTHKRKSPGIPPVCERGSTSRYINAGSSTDLPVTSELRQEKPNMDSQYLPRDQVTMPLTFRGSGLSIRGEGSLRNVRSRSALDFESNLARTHLSANHSHNYSTSLPIDHSSTMDLSGQSSSTLTRDWSQMSTSHAHGRVLLPDTSALNCEPIPFLVGSGGSNASVDVGGYHREFGTSRNPVAPQSFHNNPTQAARGVRSNFSQRSTPPFRSSSSLRLGHVAPSDDGLQMVADNYSSRHPRPLTTIGWRNSDRNGRSRISSDRYRPLADAPSHHNRFSSEGFMIVDRGLPYGSRSMVDQHTDMRMDIEDMSYEELLALGEMIGHVSTGLTEDLISKCMTETIYCSCEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKACALPDDRKDK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0636 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 716 IPR013083 -
Lele16g0636 723 SUPERFAMILY RING/U-box 661 716 - -
Lele16g0636 723 MobiDBLite consensus disorder prediction 506 533 - -
Lele16g0636 723 SMART ring_2 670 711 IPR001841 -
Lele16g0636 723 MobiDBLite consensus disorder prediction 46 71 - -
Lele16g0636 723 MobiDBLite consensus disorder prediction 557 587 - -
Lele16g0636 723 ProSiteProfiles Zinc finger RING-type profile. 670 712 IPR001841 -
Lele16g0636 723 MobiDBLite consensus disorder prediction 570 585 - -
Lele16g0636 723 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 635 716 - -
Lele16g0636 723 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 275 716 IPR045191 GO:0061630
Lele16g0636 723 Pfam Ring finger domain 669 712 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0636 Lele-ChrLele16 3538651 3547101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0636 174 722 C3H Transcription Factor Family AT2G37150 39.680 4.76e-99 314