Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0623 ATGACCAACGGCTCCTCTTTTCTGTTTTCTGGCCTTAGCTTAGATAGAAAAAGGTTCGGCGGCGATATTGCCAGGTTCGAGAAAAAAGAAAAAGATCATTCCGTGGAGGTCTCGAGCTCGGTTGAAATTGAGAAAGCAGAACCAGTTGATGGAAAAGCTCCTGCAAAGAAGAGGAAGCGGAAGGGAGTGGTTTCAGGTAATCTTCTTCTGGGGCGCTTCTGGATTAGTATACTCTTTGGCCAAATTTATCTTATTTTCTGTTTCGTTTCTGTTGGGAAAACAAAACAAGAACAGAAACAGTTGAAGGATTCAATGTCTTTGAGAAGTCAAAATCAGCGGCACTTCAACCTAAAGATGAAGATAAAGTGGTTGAGTCCGTTTAGCAGACAAAAGAACACAATAGGCAACTTGAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATGTCCCCTCCCCGCTTCAAAATTTTGAGGAGTTGAGGTCAAGATTCAGAGAACCAACACCAATCCAAAGACAGGCTATTCCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAATCCTTGGCATTTGTGTGTCCTATGCTTATAAAGCTTAAGGATCCTTCAAAAAATGGTATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAAAAGCTGGCTAAAGGAAAAAAGTTCCGTATTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTACTAAATTTTCATGTGATATACTTATATCCACACCACTTCGATTACACTCAACCATCCGGAGGAAAAAGGTTGACCTCAGCAGAGTTGAGTATCTTGTGCTGGATGAATCTGATAAGCTTTTTGAGCTTGGGTTATTCGAGCAGATTGATTCTGTTATTCAAGCATGTTCAAACCCTTCAATAATACGCTCACTTTTCAGTGCCACTTTACCTGATTTTGTTGAGGATCATGCTCGGGAGCTTATGCATGATGCCATTAGAGTTATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTACTGGAAGTGAAGAAGGGAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCAGCACTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAACTCTATGGTGAACTTCAATTTGACAACCTCAGAATTGGTGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATAATTTCAGAGCGGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATTAATTATGATTTTCCAGATTCTGCTGCTGCTTACATCCATAGGATCGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAACATCAGCAAATGGTGGACAGATTTTCGAGTGGCAAGTATGCAAAGGAATTTCGAACCAGCGTTTTGCTGATTGA 1584 0.4148 MTNGSSFLFSGLSLDRKRFGGDIARFEKKEKDHSVEVSSSVEIEKAEPVDGKAPAKKRKRKGVVSGNLLLGRFWISILFGQIYLIFCFVSVGKTKQEQKQLKDSMSLRSQNQRHFNLKMKIKWLSPFSRQKNTIGNLRKRHNIHVSGYNVPSPLQNFEELRSRFREPTPIQRQAIPVLLHDRECFACAPTGSGKSLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQTYRECKKLAKGKKFRIKLMTKELARNGDFTKFSCDILISTPLRLHSTIRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDFVEDHARELMHDAIRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPALVFVQSKERAKELYGELQFDNLRIGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMATSANGGQIFEWQVCKGISNQRFAD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0623 527 SMART helicmild6 397 478 IPR001650 -
Lele16g0623 527 CDD SF2_C_DEAD 357 487 - -
Lele16g0623 527 Gene3D - 132 352 IPR027417 -
Lele16g0623 527 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Lele16g0623 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 345 IPR014001 -
Lele16g0623 527 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 134 504 - -
Lele16g0623 527 CDD DEADc_DDX52 154 348 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lele16g0623 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 520 IPR001650 -
Lele16g0623 527 SMART ultradead3 163 360 IPR014001 -
Lele16g0623 527 Gene3D - 353 514 IPR027417 -
Lele16g0623 527 Pfam Helicase conserved C-terminal domain 380 478 IPR001650 -
Lele16g0623 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 498 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0623 Lele-ChrLele16 3492421 3497328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0623 164 507 Eukaryotic Initiation Factors Gene Family AT3G19760 32.081 1.11e-54 187