Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0620 ATGTCTTCTCACATAGTTCAGTCCTATTTCAGGAAGACTCGTGGTATGGGAGCTGCCCGCAAGCTGAGATCCCACCGCAGGAGGCAAAGGTGGGCAGACAAAGCATACAAAAAGTCTCACCTTGGGAATGAGTGGAAGAAGCCTTTTGCTGGCTCATCCCATGCAAAGGGTATTGTGCTTGAAAAGATAGGGATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCGTTTGATGAAGTATTGATAGCTGGATTTGGGCGAAAAGGTCACGCCGTGGGTGATATTCCTGGGGTCAGGTTCAAGGTTGTGAAGGTGTCTGGTGTTTCCCTCCTGGCACTCTTCAAGGAGAAGAAGGAGAAGCCCAGGTCTTAA 417 0.4916 MSSHIVQSYFRKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0620 138 Gene3D - 34 138 IPR012340 -
Lele16g0620 138 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 11 138 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele16g0620 138 SUPERFAMILY Nucleic acid-binding proteins 29 136 IPR012340 -
Lele16g0620 138 FunFam 40S ribosomal protein S23 34 138 - -
Lele16g0620 138 Pfam Ribosomal protein S12/S23 40 137 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele16g0620 138 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 25 138 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele16g0620 138 ProSitePatterns Ribosomal protein S12 signature. 68 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0620 Lele-ChrLele16 3478483 3479172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0620 12 138 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 85.714 6.96e-79 228