Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0617 ATGAATGCTGCCCTGCTCCCACCTTCATTGTCATCCATCTTCTCATCTTCTTCAGTCTCTAACCCATACCCTCTTCACTGCATCTCTCCTCCTTTCAATCTTGCCGTCGCCGCCTCCAAACCCACTCAAACCTTTCTCGTTGGCGCCACTGCCAACTACGCCGATCCATCAGATCTGTCTTTTGTTTCCACCACTTCTGACCCGACTTTCGAAGCTCTAGATCAGAAACTGCTAACGCTCCTCCGCCAAAGGAAAACAGAGGAGGCCTGGATTGCCTACACCAACAGCGCCAACCTTCCTAGCCCCACTTGCCTCAGCCGCCTTGTTTCTCAATTATCCATCCAAAATACCCGCTCGGGTCTCACGCGCGCCCAGTCCATAGTCACGCGCCTCCGTCATGAGCGACAGCTCCACCGTTTGGACGGCAACTGCCTTGGCCTACTGGCCGTGGCCGCTACTAAGGCCGGCTACACGTCCTACGCCACGTCAATCGTCAAGTCCATGCTTCGCTCTGGCTATCTTCCCCACGTGAAGGCCTGGAGTGCCGTCGTCAGCGGCCTTGCTTCTTCTGGCGACGACGGTCCCATGGAAGCTCTCAGGTTGTTCAAAGCGGTCATTCGGCGTGTACGAAAATTCAATGATCTTCAAATAGATTCAAACTCGCGGCCTGATACGGTTGCATTTAACGCGGCGTTAAATGCTTGTGCGAACTTGGGTGATAGTGATAAGTTCTTGCAAGTGTTTGATGAAATGCCCCCATATGGTGTTGAACCTGATGCCTTGACTTATAATGTCATGATAAAGCTATGTTGTAAAACGGATAGAAAAGACCTGCTTGTGTTTGTATTGGAGAGGATCTTAGTAGTGGGAATTCCTCTATGCATGACTACTTTGCATTCCCTAGTCGCAGCCTATGTTGGCTTTGGTGACATGAAGACAGCTGAGAAGTTGGTTCAAGCAATGAGGGAACAAAGAAAGGATCTTTGCAAGATACTAAGGGAGTCCAATTCAGAAAAGTTGGTTGAAAATGACGAATCCGTTTTCAAGAAGCTGCTTCCAAATTTGACAAACCAGAGTGACACTGAACCGCCATTGCTGCCAAAAGTATACGCTCCCAACTCCAGAATTTACACCACTCTAATGAAAGGCTACATGCAGGCAGGTCGTGTGAGTGATACGGTGAGAATGCTTGAGGCAATGCGCAGGCAGGATGATCGTTCCAGTCATCCCGATCATGTATCATACACCACTGTGGTTTCAGCACTTGTTAAGGCAGGTTCAATGGACAGGGCTCGTCAAATCCTTGCTGAAATGACGAGAATGGGCGTGCCTCCAAATCTGATTACTTACAATATTCTGCTTAAGGGTTATTGTATGCAGCTGCAGATAGATCAGGCAAGGGAGCTACTTAAAGATATGGTTGATGATGCTGGGATACAGCCTGATGTGGTTTCCTACAACGTTCTGATTGATGGATGTATATTAGTTGACGATAGTGCTGGGGCTCTTGCCTTCTTTAACGAGATGAGAGCAAAAGGAATAGCTCCCACTAAGATTAGTTATACTACTTTGATGAAAGCTTTTGCTTTGTCAGGTCAACCAAAGCTGGCTCACAGGGTTTTTGATGAGATGCTTAATGATCCTCGGGTTAAGGCCGATAGAATCGCCTGGAATATGTTGGTGGAAGGATATTGCAGGTTAGGGTTGATTGAAGAAGCAAAGAAAATAATTGAAAAGATGAAGAATAATGGATTGTATCCTGATGTGGCCACTTATGGTAGTCTTGCCAACGGAATAGCATTAGCGAGAAGACCAGGAGAGGCACTTCTACTTTGGAATGAAGTGAAGGAGAGGTGTAGGGTTGAGAAGGGAGAAGGCAAATCTGATTCATCTATTGTGCCACCACTCAAACCAGATGAAGGGCTTTTAGATACTTTGGCTGATATCTGTGTGAGGGCTGCATTCTTTAGGAAGGCCTTGGAAATTGTGGCTTGCATGGAAGAACACGGGATACCTCCCAACAAGACCAAGTTTACTAGAATCTATGTGGAAATGCATTCAAGAATGTTCACAAGTAAGCATGCTTCAAAGGCAAGACAGGACAGAAGGATTGAGAGGAAAAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGATTGCCTAATTCTTATTATGGAAGTGAGTGGCGTTTGGAACCTATTGATGGATATGATTCTGATTCGGTTTAG 2226 0.4663 MNAALLPPSLSSIFSSSSVSNPYPLHCISPPFNLAVAASKPTQTFLVGATANYADPSDLSFVSTTSDPTFEALDQKLLTLLRQRKTEEAWIAYTNSANLPSPTCLSRLVSQLSIQNTRSGLTRAQSIVTRLRHERQLHRLDGNCLGLLAVAATKAGYTSYATSIVKSMLRSGYLPHVKAWSAVVSGLASSGDDGPMEALRLFKAVIRRVRKFNDLQIDSNSRPDTVAFNAALNACANLGDSDKFLQVFDEMPPYGVEPDALTYNVMIKLCCKTDRKDLLVFVLERILVVGIPLCMTTLHSLVAAYVGFGDMKTAEKLVQAMREQRKDLCKILRESNSEKLVENDESVFKKLLPNLTNQSDTEPPLLPKVYAPNSRIYTTLMKGYMQAGRVSDTVRMLEAMRRQDDRSSHPDHVSYTTVVSALVKAGSMDRARQILAEMTRMGVPPNLITYNILLKGYCMQLQIDQARELLKDMVDDAGIQPDVVSYNVLIDGCILVDDSAGALAFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAHRVFDEMLNDPRVKADRIAWNMLVEGYCRLGLIEEAKKIIEKMKNNGLYPDVATYGSLANGIALARRPGEALLLWNEVKERCRVEKGEGKSDSSIVPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEEHGIPPNKTKFTRIYVEMHSRMFTSKHASKARQDRRIERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGYDSDSV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0617 741 PANTHER BNAC05G43320D PROTEIN 29 720 - -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 481 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 547 IPR002885 -
Lele16g0617 741 Pfam PPR repeat family 410 458 IPR002885 -
Lele16g0617 741 Pfam PPR repeat family 223 272 IPR002885 -
Lele16g0617 741 Pfam PPR repeat family 553 598 IPR002885 -
Lele16g0617 741 Pfam PPR repeat family 481 529 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 376 403 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 556 589 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 519 546 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 226 260 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 448 483 IPR002885 -
Lele16g0617 741 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Lele16g0617 741 Gene3D Tetratricopeptide repeat domain 547 723 IPR011990 GO:0005515
Lele16g0617 741 Gene3D Tetratricopeptide repeat domain 154 362 IPR011990 GO:0005515
Lele16g0617 741 Gene3D Tetratricopeptide repeat domain 366 475 IPR011990 GO:0005515
Lele16g0617 741 Gene3D Tetratricopeptide repeat domain 476 546 IPR011990 GO:0005515
Lele16g0617 741 Pfam PPR repeat 376 402 IPR002885 -
Lele16g0617 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0617 Lele-ChrLele16 3466331 3468556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0617 434 681 Glycosyltransferase AT1G05670 23.387 1.69e-16 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1804 13 26187461 26189683 Lele16g0617 16 3466331 3468556 hybridization
Lele14g1749 14 24576990 24580153 Lele16g0617 16 3466331 3468556 hybridization