Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0616 ATGTTGGATCTAAATCTCAACGTCCCTTCCTCAAGCTTCTTTAGATATGGTTCCCTACTTCCCTACACGATTCCACCACTTTCCACCAGCCAAACGGACAGTTCTGGTTGTGGAAGCTCTGGTTTCTCCGTTAATGCCGTACATGATGGCAATGGCTCCGAAGCCGAGGGTGACACTGAAGATGTCCGTATTCCGGTCATCCAGCCTTTGTCTTTGGCCGGAGCCGGAGTTAACGATTTAAATGAGTTGGAAGACGGTCATCCATTTCATAATTCTCCTTCAAAGAGTTGGATGAATTTCTCATGCGAGGACATCGGTTCGGTGGAGCGCTGTCAAAAAGAGCCGACGGGGACCGAAGTCGTGGAGTTTGGAATTATCGTTGCGTTACTTAATATCTCAGAATGGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAACAAGTGTACTTGGGTGGATTTGATTCAGCTCATGCTGCAGCAACCAGCAAGATATCAATTTCAACATCACTGATTATGATGATGATTGATGATGCTAGTCTCAGTAGCCTTCTTGTTCTATGTTTCCTAACTGTTACCTTTTTTCTTCGGCAGACGAGTAACTTCACAAAGGAAGAGTTTGTGCACATTCTTCAACAGAGCACTGGCTTTGCAAGGGGAAGTTCAAAATACAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAACCTCGCATGGGGGGCTGTTTCGTGGGAAAAGATGACAAGCGAAGTCTTGATCTTAACTTGGGAATAGCTCCTACTTGTTCCTCTGACAGTCTAAAGGAGAACTTAAACCATTTTGAGCTCTCTGCCTCAAGATTTACTTTTAAGCATCCTCCTGTCTGGAGCAGTACCAATTTCCTTCCCTTTTGGAAGATAATCCTCATATACTCGTGGAAGAGCAATAGAGAAGAATATGGAAGCCGATCCCTTGCCAAATGGGTCATGAACCTTCCAAGGGTTCCGGCGACGATGGCAGAAGCTCCGGCCAGTCCAGGCGGTGGCAGCCATGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGCGAGCAGGACAGGTTCCTCCCCATCGCCAACATCAGCCGAATCATGAAAAAGGCACTTCCTGCTAACGGAAAAATAGCCAAGGACGCCAAGGAGACTGTGCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACAATTAATGGTGATGATTTGCTTTGGGCGATGGCAACTCTAGGTTTTGAAGATTATATTGATCCACTGAAAATTTACCTAGCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGTTGGAGAAGCATTGGCCAAGAAAGATGTTCAACCTAGTCCTAGTGCTCAGCTTACCCATCAAGGTTCTTTTGCCCAAGGTGTTAATTACGCAAATTCTCAGGCTTAA 1470 0.4639 MLDLNLNVPSSSFFRYGSLLPYTIPPLSTSQTDSSGCGSSGFSVNAVHDGNGSEAEGDTEDVRIPVIQPLSLAGAGVNDLNELEDGHPFHNSPSKSWMNFSCEDIGSVERCQKEPTGTEVVEFGIIVALLNISEWGRWESHIWDCGKQVYLGGFDSAHAAATSKISISTSLIMMMIDDASLSSLLVLCFLTVTFFLRQTSNFTKEEFVHILQQSTGFARGSSKYRGVTLHKCGRWEPRMGGCFVGKDDKRSLDLNLGIAPTCSSDSLKENLNHFELSASRFTFKHPPVWSSTNFLPFWKIILIYSWKSNREEYGSRSLAKWVMNLPRVPATMAEAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKVGEALAKKDVQPSPSAQLTHQGSFAQGVNYANSQA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0616 489 MobiDBLite consensus disorder prediction 333 355 - -
Lele16g0616 489 ProSitePatterns NF-YB/HAP3 subunit signature. 392 408 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele16g0616 489 MobiDBLite consensus disorder prediction 455 489 - -
Lele16g0616 489 PRINTS CCAAT-binding transcription factor subunit A signature 408 426 - -
Lele16g0616 489 PRINTS CCAAT-binding transcription factor subunit A signature 427 445 - -
Lele16g0616 489 PRINTS CCAAT-binding transcription factor subunit A signature 389 407 - -
Lele16g0616 489 Gene3D Histone, subunit A 348 482 IPR009072 GO:0046982
Lele16g0616 489 MobiDBLite consensus disorder prediction 466 489 - -
Lele16g0616 489 FunFam Nuclear transcription factor Y subunit B-3 350 474 - -
Lele16g0616 489 SUPERFAMILY Histone-fold 358 452 IPR009072 GO:0046982
Lele16g0616 489 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 345 465 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele16g0616 489 Gene3D AP2/ERF domain 131 163 IPR036955 GO:0003700|GO:0006355
Lele16g0616 489 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 361 425 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0616 Lele-ChrLele16 3458909 3465142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0616 332 489 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.449 1.51e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele16g0616 CBFD_NFYB_HMF 4.9e-27 CL0012