Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0615 ATGGCTACTGATGAAGCCCAGACAGTTCCACTTCCTGATGTTATGAAGGCACCGATTCGACCCGATATCGTTACCTCTGTACACTCCGACATCTCCAAGAACATGTCCCGTATCCCCCGTGTCCCGGGTGGTGGTACTCACCGCGCCGGTCAGGGAGCTTTTGGTAACATGTGTCGTGGTGGACGCATGTTCGCTCCGAAGAAGATTTGGCGTCGCTGGCACCGTAAGATCAATGTCAATCAGAAGAGATGCGCGGTCGTTTCAGCCATTGCTGCCTCCGCAATTCCATCCCTCGGGATGGCCCGTGGGCACAGAATTGAGTCTGTCCCTGAAATGCCTCTGGTTGTCAGTGATTCTGCTGAAGGTGTTGAGAAAACTAAGGAAGCGATCAAAGCGCTGAAGAAGAAGCTGGATTCGATTTACGGATCATTTGAAAAGCCATCAGAGAAGAAGACAGGGTACTATCTTCCTAGATCTAAGATGGTTAATTCTGATTTGGCGAGGATCATCAACTCTGATGAGATTCAGTCCGTTGTGAGGCCCATCAAAAAAGAAGTCAAGCGGGCACCACTCAATAAGAACCCGCTCAAGAATCTCAATGCCATGTTGAAACTGAATCCATATGCTAAAACTGCTAAGAGGACGTCACTTCTGGCTGAAGCGCAGCGTGTGAAAGCAAAGAAAGAGAAGCTTGATAAGAAGAGGAAGTCTGTCTCTAAGGAGGAGGCTTCTGCTATAAAGGCTGCTGGAAAAACTTGGTATCAAACCGTGGTGTCTGATTCTGATTACACGGAATTCGATAACTTTTCTAAGTGGTTAGGTGTTTCCCAGTGA 834 0.4808 MATDEAQTVPLPDVMKAPIRPDIVTSVHSDISKNMSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPKKIWRRWHRKINVNQKRCAVVSAIAASAIPSLGMARGHRIESVPEMPLVVSDSAEGVEKTKEAIKALKKKLDSIYGSFEKPSEKKTGYYLPRSKMVNSDLARIINSDEIQSVVRPIKKEVKRAPLNKNPLKNLNAMLKLNPYAKTAKRTSLLAEAQRVKAKKEKLDKKRKSVSKEEASAIKAAGKTWYQTVVSDSDYTEFDNFSKWLGVSQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0615 277 PANTHER 60S RIBOSOMAL PROTEIN L4 6 135 IPR045240 -
Lele16g0615 277 ProSitePatterns Ribosomal protein L1e signature. 78 104 IPR013000 -
Lele16g0615 277 Coils Coil 214 241 - -
Lele16g0615 277 Pfam Ribosomal protein L4/L1 family 42 136 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lele16g0615 277 Gene3D - 1 135 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele16g0615 277 Gene3D - 136 180 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele16g0615 277 Pfam 60S ribosomal protein L4 C-terminal domain 153 224 IPR025755 -
Lele16g0615 277 SUPERFAMILY Ribosomal protein L4 4 135 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0615 Lele-ChrLele16 3455740 3457390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0615 131 277 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.633 4.92e-69 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1807 13 26199258 26200954 Lele16g0615 16 3455740 3457390 hybridization
Lele14g1750 14 24580400 24590291 Lele16g0615 16 3455740 3457390 hybridization