Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0610 ATGACAAGGGACGTCCTCATGAGCATTGATGGTGATGATAAAGAATTTCAAGAATTGGCTCAGCGACTACGAGATGGTAAAAAAACCACCAAAGAGGAAGTTGCCGGTGACGAACATAGTTTCCGTGAGGATGATGAGTTAAAAAGTAATGGAACAGCTGAAGAAGTTAAAGTGGGACAAGATAGGATCGTGGAAGCCCCAGCCGTTCAGCAAATGCCTCAACAACAGCCTCAAGGGGCAATTTGGGAGAGATTCCTACATCTCAGATCCCTCAAGGTCTTGCTCGTGGAGATTGATGACTCTACACGTCATGTTGTTGCAGCACTGCTCCGGAACTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCATGGAAGATCTTGGAAGATCTAACCAATCAAATAGATATTGTTTTGACGGAGGTAGCGATGCCTTGCTTATCAGGCATTGGCCTTCTGTCCAAAATTATGGCCCACAAAACGCGGAAAAACATTCCAGTGATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTGAAACCTATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTGTGGAGAAGATGTCATAGTTCAAGTGGTAGTGGAAGTGAAAGTGGCACACAAACTCAGAAATCCATTAAATCAAAGAGTCTTGAGAAGTCTGATAACAACAGTGACAGCAATGATGAGGAATACAATGGTAGTGTAGGTCTAAATAACGGGGATGGAAGTGACAATGGTAGTGGTACTCAGAGCTCATGGACTAAACAAGCTGTAGAAGTTGACAGTCCCAAACCATCCCCGTGGGATCATATAGCTGAGTGTCCTGATAGCACCTGTGCTCAAGTTGTTATCTCAAATGCCGAAATTAGTGGAAACAAGCTGTTTTCTGTAGCCATAAAGGAGTGTCCAGATCAGAAGGATCAGCTTGGTTCATCTAAATTCAATGAGCAACTTAATAGAGGACAGCTTGAACATCACTGTGAAGATCCTTCTAGCAAGTTAAGATGCAAAGGTCCATTTCAGTCTGATGCTGCTGCTAGTACATATGATTTGCGGATTCATGGTGGAGAATTTGAAGCCTCAAATAGAAGAGCCAAGCCCTCAGATACTGAAAGCAAAGCTATTAATGATAATGAAGAATTGCCGTCTCTTGAGCTCAGTTTAAAGAGACTTAGAGGGGTTAAAGATGCTGGGATTACAATTCAGGATGAGCGTAATGTTTTGAGACGATCAGACCTTTCAGCCTTTTCAAGATACAATGCGGCTTCTAATGCTAAGAAATCTCCTGGTGGTTGTGCTGGAAGCAATTCTCCCCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCACGTGACATCCAATCCCATTCTAGCGGAAATCCCCTTAACCAGAGCTCAAATGGTGCCAGCAATAACATTGACATGGGCTCCACGAATGATAACGCTTTCACTAAATCTGCTGTTATGAGCAAGACAACTGTGGCGTCACCGAGTAAATGTTTGTATCAATCTTCTGCCTTCCTGCCTATAAAAAACAACTTCATGTGTACCTCTCAACAAGTTGCAGTACATAATACTGAAGATATGACAGCCTCAACTATGCTAGAACCACCTAGAGGAGGTATACACAAGGACTTTCCAACACAGGACTTCCACGGCACGTACAACAACCATAGCTGCATCGTTAACAACATGCAGCATCAGCTACTCCGGGACCATGATGATGCATCATCAAAGAAAATTGCTGCCACAGCCCCACACTGTGGGTCATCAAATATAGTTGAAATGGGTGAAGGTAATGTTGAAAATTATAGTATCAATAGAAGTGTGTCAGGCAGCAACAATGGAAGCAATGGGCAAAATGGGAGCAGCACTGCAGTCAATGCTGGAGCGAAAAACCGAGAAAATAACAATGGAATTGCTGGGAATAGTCGAGGTGGTGATGCTAGTGGGAGCGGAAGTGGGAGTGGGACTGGGAGTGCGAGTGCTAACAGAATAGATCAGAAGACTTCTCAAAGAGAAGCAGCCTTAACTAAATTTCGGCAGAAGAGAAAAGAGAGGTGCTTCCGGAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCTCGCTTTCGTGGACAATTTGTTCGACAGGCCTCCAACAAGAGTACAAGTGAGGCAGAAGAGGTAACTGACATCTGA 2253 0.4323 MTRDVLMSIDGDDKEFQELAQRLRDGKKTTKEEVAGDEHSFREDDELKSNGTAEEVKVGQDRIVEAPAVQQMPQQQPQGAIWERFLHLRSLKVLLVEIDDSTRHVVAALLRNCSYEVIEAANGLQAWKILEDLTNQIDIVLTEVAMPCLSGIGLLSKIMAHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSKSLEKSDNNSDSNDEEYNGSVGLNNGDGSDNGSGTQSSWTKQAVEVDSPKPSPWDHIAECPDSTCAQVVISNAEISGNKLFSVAIKECPDQKDQLGSSKFNEQLNRGQLEHHCEDPSSKLRCKGPFQSDAAASTYDLRIHGGEFEASNRRAKPSDTESKAINDNEELPSLELSLKRLRGVKDAGITIQDERNVLRRSDLSAFSRYNAASNAKKSPGGCAGSNSPHNNSLEVTKKDSSRDIQSHSSGNPLNQSSNGASNNIDMGSTNDNAFTKSAVMSKTTVASPSKCLYQSSAFLPIKNNFMCTSQQVAVHNTEDMTASTMLEPPRGGIHKDFPTQDFHGTYNNHSCIVNNMQHQLLRDHDDASSKKIAATAPHCGSSNIVEMGEGNVENYSINRSVSGSNNGSNGQNGSSTAVNAGAKNRENNNGIAGNSRGGDASGSGSGSGTGSASANRIDQKTSQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRFRGQFVRQASNKSTSEAEEVTDI 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0610 750 SMART REC_2 91 206 IPR001789 GO:0000160
Lele16g0610 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 279 IPR045279 GO:0009736
Lele16g0610 750 MobiDBLite consensus disorder prediction 246 278 - -
Lele16g0610 750 ProSiteProfiles CCT domain profile. 693 735 IPR010402 GO:0005515
Lele16g0610 750 MobiDBLite consensus disorder prediction 474 498 - -
Lele16g0610 750 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Lele16g0610 750 MobiDBLite consensus disorder prediction 215 290 - -
Lele16g0610 750 CDD psREC_PRR 93 196 - -
Lele16g0610 750 Gene3D - 90 248 - -
Lele16g0610 750 MobiDBLite consensus disorder prediction 703 718 - -
Lele16g0610 750 MobiDBLite consensus disorder prediction 443 498 - -
Lele16g0610 750 MobiDBLite consensus disorder prediction 625 750 - -
Lele16g0610 750 MobiDBLite consensus disorder prediction 625 691 - -
Lele16g0610 750 MobiDBLite consensus disorder prediction 22 50 - -
Lele16g0610 750 Pfam CCT motif 693 735 IPR010402 GO:0005515
Lele16g0610 750 SUPERFAMILY CheY-like 89 215 IPR011006 -
Lele16g0610 750 MobiDBLite consensus disorder prediction 443 463 - -
Lele16g0610 750 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Lele16g0610 750 MobiDBLite consensus disorder prediction 215 232 - -
Lele16g0610 750 FunFam Two-component response regulator-like PRR37 91 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0610 Lele-ChrLele16 3427459 3434810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0610 167 737 Response Regulator Gene Family AT5G02810 45.382 1.97e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele16g0610 Response_reg 3.5e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1812 13 26223581 26231582 Lele16g0610 16 3427459 3434810 hybridization
Lele14g1755 14 24612650 24619944 Lele16g0610 16 3427459 3434810 hybridization