Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0600 ATGAGTCTTCTTAGAGCCGCACTGAAATCCCAACTCTACTCTGTCCACTCTTCAAGAGTGTCATGGATTCCCTCCTCTCCTTCGAGCCACGTTGATCGTGCCCAATGGGATATTGTTACTCCCTATGATGGAAAAACTATTTTGATGCGAGGAATTCCTCGCAATGCACTAATAGACGATATAGAACGTTTTCTGCACGGTTATGAATATGATCAGACGTCCATCAATAGTTTTCTAAGACTCAACTATATCGAAAGAGAAGCACATGATCCGATAATGGAAGAAAGAGCAATCATCTTAGCTGCAATCTCCATTCTCTCTCCATCCCAACTCTCCCATCTCTCTCTCTCCCTCCTCTCCGCCACCCACCACCACCACCTCCGCCTCTCCTCCGTCCTCTCCTCCCCCTCTCTCTTCTCCTCCACCCTCCGTCACCTCAACTCTCTCTCCCTCCCCGAAAAGTTCCTCCTCATCGCTCGCCACCTCCTCTCCTCTCTCCACCGCATCACCACCCACTTCCTCTCCGACCCCACTATCCCATCTCCTCCTCCGCCTCCGCCGCCCATATCCATCGCCATTCGACAGAGAGACCTGAACGCCGTTCTCCTCCTCCTCTTTTTCTGCGAAACCCACCAACACAACCCCACAGTCCTCGAGGAGAATTATTCGGATTGGCGGCTCACCTTATGTAATCTTTTCTCTGATAAGCTGTTGACAGCTGCTTATTCTCCCGTAGGGGCGACTGCTTGGACGGCCCTTGCTCCTTACGTTGACATGGTGAGTTGGAGCTGGAGACTTGTGAGGGTAAGTTGCGGCGGCGGGAAGAAGGGGGCGTCGCCGGAGACGTTGGTAGGACTTCCGGCGGTGGAAGTGAAGGAGGGCGGACGGGAGTGCGTAATATGTAAAGAGGAGATGAAAGTAGGGAGGGACGTGTGTGAGTTACCATGCGAGCATCTGTTTCATTGGAGGTGTTTATTGCCGTGGCTGAAGGACAATGACACGTGTCCTTGCTGCCGGTACCGGTTGCCGTCCGATGATGTCATTGGGGAAATCCAACGGCTCTGGGATATGCTAATTAAATTGAGGGCACGGCAAAGCCCGGTTCAGTCATAA 1113 0.5247 MSLLRAALKSQLYSVHSSRVSWIPSSPSSHVDRAQWDIVTPYDGKTILMRGIPRNALIDDIERFLHGYEYDQTSINSFLRLNYIEREAHDPIMEERAIILAAISILSPSQLSHLSLSLLSATHHHHLRLSSVLSSPSLFSSTLRHLNSLSLPEKFLLIARHLLSSLHRITTHFLSDPTIPSPPPPPPPISIAIRQRDLNAVLLLLFFCETHQHNPTVLEENYSDWRLTLCNLFSDKLLTAAYSPVGATAWTALAPYVDMVSWSWRLVRVSCGGGKKGASPETLVGLPAVEVKEGGRECVICKEEMKVGRDVCELPCEHLFHWRCLLPWLKDNDTCPCCRYRLPSDDVIGEIQRLWDMLIKLRARQSPVQS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0600 370 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Lele16g0600 370 SUPERFAMILY RING/U-box 294 345 - -
Lele16g0600 370 Pfam Ring finger domain 297 339 IPR001841 -
Lele16g0600 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 262 343 - -
Lele16g0600 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Lele16g0600 370 SMART ring_2 298 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0600 Lele-ChrLele16 3379571 3385746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0600 94 360 C3H Transcription Factor Family AT5G02750 41.667 6.24e-67 211