Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0585 ATGGGGAATTCAGTCGGCCATCGCAAACACCGTAACTCCTCTCCTCACTACCCCACACCTCCCTCCTATATATATGCTTCTCCGCCTCACCTTCCAACCCCAATTTCAGCTGCTCCCTCTCACGGGCACTTCGCCGCCGGAATGCTCCCTTTACCTTATTCCCACGTCGACTCCAGTCTGCGTGCTCTCGCCGCCCAAGCTGAAGGCTTTGGTCGATGTGCGATCGGTGGGCTTCATGGTCCCCTTTATCACGTTACAACTTTAGCAGATGATGGACCAGGATCACTCCGCGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTATTTGAGGTTTCTGGAACTATTCATCTTTCATCTTACTTGAGTGTGTCATCTTACAAGACTATTGATGGCCGTGGTCAAAGGATTAAACTCGCTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGTTAGAAGGTGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGGGATTTTGATGATGGACTGATAGATATTACCCGAGAAAGCACTGATATTACTATTTCTAGATGTCATTTTGCTCAGCATGACAAAACGATGCTTATTGGAGCGGATTCCTTTCACATTGGTGATAGATGCATGAGGGTGACTATTCACCATTGTTTCTTTGATGGAACACGACAGCGACACCCTCGTGTTAGATTTGCAAAAGTGCATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCGAGTGTGGAATCACAGATATACTCACAATGCAACATCTATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCGGGAGACAAGGAGGCAGAAGCAAGTGGTCACATATGGTCTGAAGGAGACTTGTTCATAAGTGGAACTCAGGCAGGCTTAAAGAGTGATAGCATGGGAGCTCCCACATTTCATCCAAGTCAACACTATACAACGTGGACAGTGGCACCTCCTACAGAAGATCTCAAACAGCTTCTTCATCACTGCACCGGATGGCAATGTGTTGCACGCCCACCAGATCGTCCCCTGCCTGCATAG 1137 0.4679 MGNSVGHRKHRNSSPHYPTPPSYIYASPPHLPTPISAAPSHGHFAAGMLPLPYSHVDSSLRALAAQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLAGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADSFHIGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDLFISGTQAGLKSDSMGAPTFHPSQHYTTWTVAPPTEDLKQLLHHCTGWQCVARPPDRPLPA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0585 378 SMART amb_all 113 291 IPR002022 -
Lele16g0585 378 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Lele16g0585 378 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Lele16g0585 378 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Lele16g0585 378 Pfam Pectate lyase 122 284 IPR002022 -
Lele16g0585 378 SUPERFAMILY Pectin lyase-like 66 368 IPR011050 -
Lele16g0585 378 MobiDBLite consensus disorder prediction 1 23 - -
Lele16g0585 378 Gene3D - 53 359 IPR012334 -
Lele16g0585 378 PANTHER PECTATE LYASE 18-RELATED 55 330 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0585 Lele-ChrLele16 3296173 3298771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0585 88 377 Polysaccharide Lyase AT3G55140 74.483 2.25e-167 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0585 16 3296173 3298771 Lele05g1264 05 7889815 7893118 CCT
Lele16g0585 16 3296173 3298771 Lele06g1129 06 7015490 7018668 CCT
Lele16g0585 16 3296173 3298771 Lele07g1310 07 7932259 7934672 CCT
Lele13g1836 13 26362474 26365058 Lele16g0585 16 3296173 3298771 hybridization
Lele14g1782 14 24751685 24755144 Lele16g0585 16 3296173 3298771 hybridization