Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0579 ATGGAGTCTCTGGCCAGCCTGCATCGCTGTCGCCAACCGCTTCCATTCTCACTCAATCATCTCCCTTCTTCACTATCAAGTCCCGTATCTTCCGTCTCCTTTAGGCCGCTACCACCACGTGTTTCGCCGTCGCAATTCTCGTCTTCTTCTTTCAGATCATCGCCCATTAGAGCCACATCCTCGCCGTCAGAGTCGTTCTCTGACTCTGCTTTCCGTAGACCCCGAACCACATTACCACAGTTGCTTCAAACCCTAAACTCCCTTTTTCCTCCCGTCATCCGAACCACCTGCACCGTCATAACAGCAGCTATGTTTTTCTACACGCGTCTTCACCACAAGCCCGCCATTGCAGCCCCGCTCGAGACGCCCACGGTGGAGTCGATGGAAAATTCTTCGAAGGAAGAAAATCAAAGAACTATTGAAGAAAAATTAAGCAACAATCCCAATGATACCGAGGCTCTTCGGTCGCTCATCGAGGTAAAGGTCAGAGCGCGCAAAATTGAGGAAGCAATCCAGGTTATAGACCGTTTAATTGAGCTCGAACCGGAAGAGTTTGAGTGGCCACTGCTGAAGGCTCACATGTATGTTTACAATGGTGACTACGAATCAGCTAAAGGGAAGTTCGAAGAAATTCTAAAGAAAGATCCCTATCGTGTCGAGGCCTATCATGGCCTAGTAATGGCAGCTTCGGAATCGGATAAGCCGTTGGAGGATTTGTCGAAGAGGGTTGAAGAAGCAGTGGAATTGTGCAAAAACCAAAAGCGGGAATCGGAGGTCAGGGATTTGAGGCTCTTGGTTGCGCAGATTAAAGTCATGGAGGGAGAATTTAATGATGCGCTGAGGGCCTATCAGGAGCTTGTAAAGGAAGAACCAAAGGATTTCAGGCCTTACTTATGTCAGGGGATCATATATACTATTCTAAGAAAGAAAGATGAAGCTGAAAAACAATTTGACAAGTTCCGGGGGCTTATCCCTAAGAACCATCCTTACAGGGAGTATTTTGAGGATAATATGTTTGAAATGAATGTAATTTCACGGAAGGCAGAGAGGAAGGGAGCGGGTGCGGAGAACTGA 1074 0.4749 MESLASLHRCRQPLPFSLNHLPSSLSSPVSSVSFRPLPPRVSPSQFSSSSFRSSPIRATSSPSESFSDSAFRRPRTTLPQLLQTLNSLFPPVIRTTCTVITAAMFFYTRLHHKPAIAAPLETPTVESMENSSKEENQRTIEEKLSNNPNDTEALRSLIEVKVRARKIEEAIQVIDRLIELEPEEFEWPLLKAHMYVYNGDYESAKGKFEEILKKDPYRVEAYHGLVMAASESDKPLEDLSKRVEEAVELCKNQKRESEVRDLRLLVAQIKVMEGEFNDALRAYQELVKEEPKDFRPYLCQGIIYTILRKKDEAEKQFDKFRGLIPKNHPYREYFEDNMFEMNVISRKAERKGAGAEN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0579 357 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Lele16g0579 357 Gene3D Tetratricopeptide repeat domain 105 345 IPR011990 GO:0005515
Lele16g0579 357 Coils Coil 269 289 - -
Lele16g0579 357 SMART tpr_5 294 327 IPR019734 GO:0005515
Lele16g0579 357 SMART tpr_5 260 293 IPR019734 GO:0005515
Lele16g0579 357 SMART tpr_5 185 218 IPR019734 GO:0005515
Lele16g0579 357 SMART tpr_5 151 184 IPR019734 GO:0005515
Lele16g0579 357 MobiDBLite consensus disorder prediction 41 72 - -
Lele16g0579 357 SUPERFAMILY TPR-like 144 328 IPR011990 GO:0005515
Lele16g0579 357 Pfam Tetratricopeptide repeat 190 246 - -
Lele16g0579 357 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Lele16g0579 357 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 149 323 IPR044620 -
Lele16g0579 357 Coils Coil 236 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0579 Lele-ChrLele16 3255076 3256149 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1140 06 7079454 7080278 Lele16g0579 16 3255076 3256149 CCT
Lele08g1132 08 7089831 7090631 Lele16g0579 16 3255076 3256149 CCT
Lele05g1277 05 7953651 7959275 Lele16g0579 16 3255076 3256149 CCT
Lele13g1843 13 26395998 26397083 Lele16g0579 16 3255076 3256149 hybridization
Lele14g1788 14 24786478 24787551 Lele16g0579 16 3255076 3256149 hybridization