Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0573 ATGGCTCCCACGAAGGCCGAGAAGAAGCCCGCTGAGAAGAAGCCGGCAGAGAAAGCTCCGGCGGAAAAGAAGCCCAAGGCCGAGAAGAAGATCTCAAAGGAGGGTGGTGACAAAAAGAAGAAGAAGGTCAAGAAGAGCACTGAGACCTACAAGATATACATTTTCAAGGTCTTGAAGCAGGTCCATCCCGATATCGGTGTCTCCAGCAAGGCTATGGGAATCATGAATAGTTTCATTAACGATATATTTGAAAAGCTCGCTCAGGAGGCGTCGCGATTGGCCAGGTATAACAAGAAGCCTACCATTACGTCTCGGGAAATTCAGACGGCTGTGCGATTGGTGCTGCCTGGAGAATTGGCTAAGCACGCTGTTTCTGAGGGTACCAAGGCGGTTACCAAATTTACCAGCTCTTAG 414 0.4952 MAPTKAEKKPAEKKPAEKAPAEKKPKAEKKISKEGGDKKKKKVKKSTETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0573 137 MobiDBLite consensus disorder prediction 1 45 - -
Lele16g0573 137 ProSitePatterns Histone H2B signature. 105 127 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 SMART h2b3 40 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 Pfam Core histone H2A/H2B/H3/H4 5 113 IPR007125 GO:0003677
Lele16g0573 137 Gene3D Histone, subunit A 3 137 IPR009072 GO:0046982
Lele16g0573 137 PRINTS Histone H2B signature 121 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 PRINTS Histone H2B signature 108 121 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 PRINTS Histone H2B signature 50 68 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 PRINTS Histone H2B signature 91 108 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 PRINTS Histone H2B signature 69 89 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 SUPERFAMILY Histone-fold 21 137 IPR009072 GO:0046982
Lele16g0573 137 PANTHER HISTONE H2B 20 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele16g0573 137 FunFam Histone H2B 4 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0573 Lele-ChrLele16 3230702 3231115 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0573 16 3230702 3231115 Lele06g1140 06 7079454 7080278 CCT
Lele16g0573 16 3230702 3231115 Lele08g1132 08 7089831 7090631 CCT