Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0570 ATGGAAGGATCTCCGATCACAATCCGACGAGACGTTTGGCGCCAAACCTTCCAAAAGTTAAATCTCGCCCGGGAACCAAGCTTTTCGTCTGAGTTTGCTGCCGCCCTGTTCGTTACAAACCAAACCCTAACCCTACCGCATCCACTTTTATCATTCAGATCTAATCGGATAATAGACTTCAGTATTCTTGACGAATCTCAGATCTGTAAACATAAATTTGGATTTATAGCGGCTGGAGTTGGCAACTTGTTTTGGGTTTTCTTCTCGAATGCCGGGCATCAATATCACTTTTCTAGTAGCTACCACGTTGGAATTCCTAGAGGGTTTTATTCTTTGATGGGAGACGGTGCAGTTTGCGTCGAATTACCCGCAGATAGAACAGATGAAAACGATGAGATGTCAAGAACGGACCTGAAGAGGGACTGCCAATGTCTTACTGATAATGAAGTTGACGCCTCCCCGAATAAGAAACAAGCAAAAGAAATCTCAAACGATGACGTGCGCTCTGAAGTTTCTAATCCCAATATGTATTCGAAAGAGAATGTATTAGCATTTCAAGATATTAGTAGCCAGCCCAGCGAGTTGGCAAATACTAATCAAGCAGAGTGTGGAGAAGTAACGTCCACTTGTTTGGAGAATTCAAGTTCGGATGAGACCTCGAGTGATGGAGGGGGTGATCATAATACCATTTCTCAGAACGATAAGGGCGTGAGCAGTGCTGAAATGACGTCCTGTGTTGTTCTGGAAATTCCCAAGCATGCCAGTTCATCTGGAATCAGAAAGATTACGTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTGTCAGTCACTTGCCAGTACAAATAGGAATCCTTACCACGAAGAGCCAAGTTCTGATTATAAGTCGGGGATGTTAGAAAGCTCGTGTGGGATGGAATATGTTCAAGCTGGTGATTTTAACTTGTACGCTCGAAATATGGAGTTGAAAATGTCCAAGAAGGTAGTTCCTAGCTGTTATCCTACAAATGTTAAGAAGCTTCTAGCATCTGGTATTCTTGATGGAGCTCGGGTGAAGTACATTTATACTCATAGCGCAGGAAAGATTGAGCTTCCTGGGATTATTCAGGGTGGTGGATATAAGTGTGGCTGCTCGTTGTGCAACTTCTCCGGGGTTCTAAGTGCGTATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGGCATCCAAATAATCACATATTCCTGGAAAACGGAAAGCCAATTTATAGTATTATACAGGAAATTAAAACTGCTCCACTCAGCTTATTAGATGAGGTTATAAAGAACGTTGCTGGTTCATCTGTCAATGAAGAGTCCTTCCAGGTTTGGAAAGCAAGTCTTTTGCAAAGCAATGGGCAGGTTGAGGCAGAAAAGAATTTTAACTCCAAGCTTGTTGGCATGCCTCATACAAACGTAAGTGAATTTGTAGATGGTATGAGCTACATGTCCTGTTCAGATGTGCTGAGTCCGGTTGAGCAGCAAAGTCATGTGAAGCAGACAACTGACGAGAGGAAACATGTGAAAAAATCAAGCTCCCATACTTCTAACTCAGGTCTACAGCAAAAGAAAACTGCAGATGGTTGCAATAAGAGAAGGGATAATGATTTGCATAGGCTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAGGGAAATGGTATAGTTTGTGGTTGTTGTGATAGAGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGCATGGCTGCACGGCGTCAACCTTATCGTCATATATATACTTCCAACGGATTAACACTCCATGATATAGCCCTCTCATTAGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGATATGTGTGCAGTATGCGGAGATGGAGGGGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGTTTGCTTAGGTTTACAGTGTGCTCCTGAAAGCTGTTGGCTTTGTCAAACTTGTAGAGATATTTCTGGCTGCAGCAGATTATCTTCTACAGCGAGGCCAATTAAGATAAGGTTGACCCGGGTTGTTAAAGAGCCAGAATTTGAGATGGGTGGTTGTGTTGTTTGTAGGGAGCATGATTTTAGTGTCGCTAAATTTGATGAGCGAACAGTTATAATTTGTGACCAGTGTGAGAAGGAGTATCACGTTGGGTGCTTGCGGGACAGTGGGCTATGTGAGTTGGAAGAATTGCCTAAGGACAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGGGGCCCTACAAAATTCAGTTTCTGCTGGAGCAGAGATTATACCAGCTTCCTTGTCAAACCTAATAAATAGGAAGCGTGAGGAGAGGGGCTTACCTATTGATGGAGGAGGCATTGATGATATCCAATGGCGAATTCTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTACTTTCGCGGGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAGTCTCCGGTCGTGACTTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGTCAAGAGTTTGGGGGGATGTATTGTGTTGTCTTGATAGTGAAATCTGTTGTTGTATCTGCTGGACTACTTAGGATTTTTGGACGTCATGTTGCTGAACTTCCAATGGTTGCTACAAGTAGAGAACATCAAGGAAAAGGTTATTTTCTAGTGTTATTCTCTTGCATAGAGAAGTTGTTGTTGTCCCTGAAGGTGGAAAGGCTGGTGCTTCCTGCAGCTGAGGATGCGGAATCGATTTGGACTAGAAAATTAGGCTTCCGAAAGCTGACTGAAGACCAGTTATCCAAATATCTCAGAGAGGTGCAGCTCACCCTCTTTAATAAGACTTCGATGCTGGAGAAGACAGTGCAGCTGGCGACGGAATGA 2949 0.4296 MEGSPITIRRDVWRQTFQKLNLAREPSFSSEFAAALFVTNQTLTLPHPLLSFRSNRIIDFSILDESQICKHKFGFIAAGVGNLFWVFFSNAGHQYHFSSSYHVGIPRGFYSLMGDGAVCVELPADRTDENDEMSRTDLKRDCQCLTDNEVDASPNKKQAKEISNDDVRSEVSNPNMYSKENVLAFQDISSQPSELANTNQAECGEVTSTCLENSSSDETSSDGGGDHNTISQNDKGVSSAEMTSCVVLEIPKHASSSGIRKITFKFSKKKEDYDCQSLASTNRNPYHEEPSSDYKSGMLESSCGMEYVQAGDFNLYARNMELKMSKKVVPSCYPTNVKKLLASGILDGARVKYIYTHSAGKIELPGIIQGGGYKCGCSLCNFSGVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQVWKASLLQSNGQVEAEKNFNSKLVGMPHTNVSEFVDGMSYMSCSDVLSPVEQQSHVKQTTDERKHVKKSSSHTSNSGLQQKKTADGCNKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAVCLGLQCAPESCWLCQTCRDISGCSRLSSTARPIKIRLTRVVKEPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDSGLCELEELPKDKWFCCDDCNRIYGALQNSVSAGAEIIPASLSNLINRKREERGLPIDGGGIDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGRHVAELPMVATSREHQGKGYFLVLFSCIEKLLLSLKVERLVLPAAEDAESIWTRKLGFRKLTEDQLSKYLREVQLTLFNKTSMLEKTVQLATE 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0570 982 MobiDBLite consensus disorder prediction 153 167 - -
Lele16g0570 982 MobiDBLite consensus disorder prediction 149 173 - -
Lele16g0570 982 ProSitePatterns Zinc finger PHD-type signature. 710 765 IPR019786 -
Lele16g0570 982 MobiDBLite consensus disorder prediction 498 536 - -
Lele16g0570 982 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 819 969 IPR000182 GO:0016747
Lele16g0570 982 SUPERFAMILY FYVE/PHD zinc finger 707 763 IPR011011 -
Lele16g0570 982 PANTHER AUTOIMMUNE REGULATOR 128 976 - -
Lele16g0570 982 MobiDBLite consensus disorder prediction 209 236 - -
Lele16g0570 982 FunFam PHD zinc finger protein 708 768 - -
Lele16g0570 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 768 IPR013083 -
Lele16g0570 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 681 IPR013083 -
Lele16g0570 982 ProSiteProfiles Zinc finger PHD-type profile. 707 768 IPR019787 -
Lele16g0570 982 SUPERFAMILY FYVE/PHD zinc finger 622 677 IPR011011 -
Lele16g0570 982 ProSitePatterns Zinc finger PHD-type signature. 637 676 IPR019786 -
Lele16g0570 982 SMART PHD_3 709 766 IPR001965 -
Lele16g0570 982 SMART PHD_3 636 677 IPR001965 -
Lele16g0570 982 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 624 702 - -
Lele16g0570 982 Pfam Tify domain binding domain 570 619 IPR032308 -
Lele16g0570 982 Pfam Tify domain binding domain 366 420 IPR032308 -
Lele16g0570 982 Gene3D - 858 965 - -
Lele16g0570 982 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 861 952 IPR016181 -
Lele16g0570 982 ProSiteProfiles Zinc finger PHD-type profile. 634 679 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0570 Lele-ChrLele16 3209443 3218900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0570 113 982 PHD Transcription Factor Family AT3G53680 53.579 0.0 895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1854 13 26452117 26459574 Lele16g0570 16 3209443 3218900 hybridization
Lele14g1795 14 24819243 24829638 Lele16g0570 16 3209443 3218900 hybridization