Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0569 ATGGTGGGTATCGTCTCATTGATAACAGGGAGGGCAGGCCCGAGTGGGTTTGGTTCTGCTTCAACTGCAGAGAAAGTCACCGAAGGAATTGATGCCTCCAATCTCACTGCCATTATCACAGGAGGAGCAAGTGGAATTGGCTTAGAGACAGCAAGAGTGTTAGCTCTTCGAAAGGTTCATGTGATCATTGCTGCGAGGAATATGGAAGCTTGCAAGAAAGCAAAGAAGCTTATTCTTGACCAAAACCAGTCTGCTCGTATCGATATACTGAAACTCGACCTTGCCTCTGTCAAGTCCATCAGAGCATTTGTTGACAACTTCATCGCTCTTGATATTCCTCTCAACATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCTTTCCAACTCTCACAGGATGGGATTGAGATGCAGTTCGCAACAAATCATATCGGACATTTCCTCTTGACCAATTTTCTTCTCGACAAGATGAAACAAACTGCAAAAGCCACTGGAATTGAGGGAAGGATCGTGAATCTGTCATCAGTTGCCCATAATTATACTTACTTGAAGGGCATTCGATTTGAGAAGATCAATAATCGAATTGGTTACTGTGACAAGAAGGCATATGGGCAGTCCAAGTTGGCTAACATTCTTCACTCAAATGAGCTAGCTCGCCGCCTGCAGGAAGAAGGTGTGAACATTACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCTACCTTCACTATGAATCTTCTGAAAGTGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCTGCCACAACATGCTATGTTGCTCTTCACCCGAGAGTGAAAGGCGTGAATGGGAAATACTTTCAGGATTGTAATGAACATAAGCCAAGTTCATATGCCAGAAACCAAGTGTTAGCCAGGAAACTCTGGGATTTCAGCAACGCGGTGATCAATTCACTCTCCAAGGCTTAG 972 0.4424 MVGIVSLITGRAGPSGFGSASTAEKVTEGIDASNLTAIITGGASGIGLETARVLALRKVHVIIAARNMEACKKAKKLILDQNQSARIDILKLDLASVKSIRAFVDNFIALDIPLNILINNAGVMFCPFQLSQDGIEMQFATNHIGHFLLTNFLLDKMKQTAKATGIEGRIVNLSSVAHNYTYLKGIRFEKINNRIGYCDKKAYGQSKLANILHSNELARRLQEEGVNITANSVHPGVIMTPLMRHSTFTMNLLKVFTFYIWKNVPQGAATTCYVALHPRVKGVNGKYFQDCNEHKPSSYARNQVLARKLWDFSNAVINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0569 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lele16g0569 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lele16g0569 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lele16g0569 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Lele16g0569 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lele16g0569 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Lele16g0569 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Lele16g0569 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lele16g0569 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lele16g0569 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lele16g0569 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lele16g0569 323 Gene3D - 25 320 - -
Lele16g0569 323 PANTHER RETINOL DEHYDROGENASE 14 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0569 Lele-ChrLele16 3206358 3207942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0569 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 23.810 4.56e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1161 06 7210157 7216213 Lele16g0569 16 3206358 3207942 CCT
Lele07g1345 07 8131965 8134821 Lele16g0569 16 3206358 3207942 CCT
Lele08g1153 08 7212649 7216152 Lele16g0569 16 3206358 3207942 CCT
Lele05g1296 05 8072172 8074974 Lele16g0569 16 3206358 3207942 CCT
Lele13g1856 13 26464271 26467587 Lele16g0569 16 3206358 3207942 hybridization
Lele14g1797 14 24832430 24835769 Lele16g0569 16 3206358 3207942 hybridization