Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0533 ATGTCTAGACCGTTGCCGTCATCCTTGTCAGTCCTTCCAACTCCGATAGGAGAGAAGTTTTCTGATTCTCAGCTGGCTGTCATGGCCAAAGAGCTTATGACTGGGCCTATAACTCAGCCAGGTCATTTAAATTCCAATGGAGCAGTTGTACACATGTTTTCATCTTCCCCTGGATATTCAACTGATCTCCATCATTCATCTCTTTCGCCTCATGAAAAACAATCAACAAGTGGTCATTTCATTTCACAGTCATCCAGTAACATGGCTTCATTGCCATTTTCTTATTCTTCCAATAGTGGACCACTTCCTTCTTCAACACCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATATAGAACCCCTGCCCAACTTTCTTGATTTCCCTGTAAATACTACCATTGAGAATAGTCAAGCAGAAAACAGTGCCCGCACGGTCATGGCATCCGAGGAGTATGGTAAGCAAAATGAATGGCAAGAGTGGGCTGACCAGCTTATAAGTGAAGATGACCCTTTGACTTCTAATTGGAATGACCTTCTTACTGACAACGTTCAAGATCTTGAACCAAAGGTGGGATTCCAGGTTTCACATGTTCCAGAAAACCAGTCCCAAGATCAGCAGCTACTTCCTGCTTCATCCGGAGACAACTGCTTTGTTGCTCCCCCAGCTTCATCTGCAAGTTCTGCTCCTGGCAAGCCACGGATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAGACCGGAACCATCTGAAGGATCCTCGGAGAAACGACTAACTTCCATTGAAGATATGCCTCCTCTAGACTTGAGAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAGCAACTTGAGATTCAACGAAACCTACAACTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAATGCAAATCTGGAGTGTCTTCAGATGCTATCAAAGATTGTCCTGCCAAAGGTGAAGTGGAGGGCGATTGCAAGTTGGAACGTGATCAAGCTAATAGCAGTATTGAAGTTGAGGAAAGCTCTATGAAGAATGATGGTCCTGAAAATCAAGCTGCTGAGAATACTAAGCAACAAACCAGTGAAGAGAGTGCTCCAGCCTCAAAGAGGCAGAGAACAGAGGAGTAA 1308 0.4411 MSRPLPSSLSVLPTPIGEKFSDSQLAVMAKELMTGPITQPGHLNSNGAVVHMFSSSPGYSTDLHHSSLSPHEKQSTSGHFISQSSSNMASLPFSYSSNSGPLPSSTPNNYFKENSASWNIEPLPNFLDFPVNTTIENSQAENSARTVMASEEYGKQNEWQEWADQLISEDDPLTSNWNDLLTDNVQDLEPKVGFQVSHVPENQSQDQQLLPASSGDNCFVAPPASSASSAPGKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKRLTSIEDMPPLDLRTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVSSDAIKDCPAKGEVEGDCKLERDQANSSIEVEESSMKNDGPENQAAENTKQQTSEESAPASKRQRTEE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0533 435 FunFam Myb family transcription factor 232 290 - -
Lele16g0533 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 204 425 IPR044848 GO:0003700
Lele16g0533 435 MobiDBLite consensus disorder prediction 396 426 - -
Lele16g0533 435 Coils Coil 321 341 - -
Lele16g0533 435 Pfam MYB-CC type transfactor, LHEQLE motif 318 365 IPR025756 -
Lele16g0533 435 MobiDBLite consensus disorder prediction 287 308 - -
Lele16g0533 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 290 IPR017930 -
Lele16g0533 435 MobiDBLite consensus disorder prediction 61 84 - -
Lele16g0533 435 MobiDBLite consensus disorder prediction 366 435 - -
Lele16g0533 435 Pfam Myb-like DNA-binding domain 235 286 IPR001005 -
Lele16g0533 435 Gene3D - 232 291 - -
Lele16g0533 435 SUPERFAMILY Homeodomain-like 231 287 IPR009057 -
Lele16g0533 435 MobiDBLite consensus disorder prediction 375 395 - -
Lele16g0533 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 233 287 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0533 Lele-ChrLele16 2950334 2953194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0533 13 382 G2-like Transcription Factor Family AT4G28610 48.849 2.72e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele16g0533 Myb_DNA-binding 4.2e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1343 05 8432276 8438837 Lele16g0533 16 2950334 2953194 CCT
Lele13g2363 13 29343130 29352612 Lele16g0533 16 2950334 2953194 CCT
Lele15g0056 15 331728 341994 Lele16g0533 16 2950334 2953194 CCT
Lele16g0058 16 369675 373629 Lele16g0533 16 2950334 2953194 CCT
Lele13g1895 13 26716916 26719753 Lele16g0533 16 2950334 2953194 hybridization
Lele14g1833 14 25068165 25071046 Lele16g0533 16 2950334 2953194 hybridization