Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0520 ATGGATTCCGCAAGGAGCTGGTTGCAAAAGTTACAACCACGAGATAAAATGAGGTCATCGTCAAAGAAAAAGGAGGATAGTGCTGGAGTAGATTCAAATCAACCGGTAGATGAAGAAGCTCTTTCCAGTACCACAAAACAAAAGGTTACTGCAGCCAAGCAGTACATTGAGAACCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGCCGAACTATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCAGAGGAAGATCAAAGCAACCTTCTTAAGTTTCTGGAGAAGAAGGAAACAGAATATATGCGCCTTCAGAGGCATAAGATGGGCGTTGATGATTTTGAGTTATTAACTATGATTGGAAAAGGTGCCTTTGGAGAGGTCAGGGTCTGCAGGGAAAAGACAACAAGCAATGTGTATGCAATGAAGAAGCTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAGCATGTCAGAGCTGAAAGGAACCTCCTTGCTGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTGTATCTTATTATGGAGTATCTACCTGGTGGGGATATGATGACCCTTCTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGCTGAAACAGTTCTGTCTATTGAATCTATTCATAAACACAATTATATCCATCGGGATATCAAGCCTGATAATTTGTTACTTGATAAATACGGACACTTGAAACTTTCAGATTTTGGACTATGTAAACCATTAGACTGCAGCACACTTCAAGAAGATGATTTTTCAGTAGGTCAGAATGCAAATGGATCTACACAGAATGGTGAACGCTCAGCTCCAAAACGCACACAACAAGAACAACTACAACATTGGCAAAAGAACAGAAGAACACTTGCTTATTCTACCGTTGGCACACCTGATTATATTGCCCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGACTGGTGGTCGCTTGGTGCTATTATGTATGAAATGTTGGTGGGGTATCCTCCTTTTTATTCAGATGATCCAATGTCAACATGTAGAAAGATAGTAAATTGGAAATCTCACTTGAAGTTTCCTGAAGAGGCAAGGCTATCTCCAGAGGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAACCACAGACTAGGGTCAAACGGTGCTGATGAAATAAAGGCTCATCCATTCTTCAAAGGCGTGGAATGGGATAAGCTATATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCAGACATCCAGAATCACCAAGCAGCAAGATCTGGGCCTTGGAGAAAGATGCTCTCGTCTAAAGACTTAAATTTTGTCGGGTACACATATAAGAATTTTGAAATTGTCAATGACTATCAAGTTCCTGGGATGGCTGAATTGAAGAAGAAAACCTCCAAATCAAAGAGGCCATCTATCAAGTCAATTTTTGAGGGTGAGTCAGAAACATCAGAGGTGTCTGGGTCTTCAGATGCGCCTGCAGGCAATCAATCTGCTCAAGGGAGCTTCCTAAGCCTCTTGCCACCCCGTTTAGATGTGTCTCATAAAGACAAAGAAACCTAA 1668 0.4065 MDSARSWLQKLQPRDKMRSSSKKKEDSAGVDSNQPVDEEALSSTTKQKVTAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQSNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTSNVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAETVLSIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLQEDDFSVGQNANGSTQNGERSAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVNHRLGSNGADEIKAHPFFKGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEEADIQNHQAARSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKTSKSKRPSIKSIFEGESETSEVSGSSDAPAGNQSAQGSFLSLLPPRLDVSHKDKET 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0520 555 CDD STKc_NDR_like 116 480 - -
Lele16g0520 555 SMART serkin_6 118 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0520 555 MobiDBLite consensus disorder prediction 497 511 - -
Lele16g0520 555 MobiDBLite consensus disorder prediction 1 48 - -
Lele16g0520 555 Gene3D Transferase(Phosphotransferase) domain 1 202 434 - -
Lele16g0520 555 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lele16g0520 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Lele16g0520 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 477 - -
Lele16g0520 555 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0520 555 Coils Coil 60 80 - -
Lele16g0520 555 Gene3D Phosphorylase Kinase; domain 1 116 445 - -
Lele16g0520 555 FunFam Non-specific serine/threonine protein kinase 202 269 - -
Lele16g0520 555 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Lele16g0520 555 ProSiteProfiles Protein kinase domain profile. 118 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0520 555 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lele16g0520 555 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lele16g0520 555 MobiDBLite consensus disorder prediction 497 555 - -
Lele16g0520 555 MobiDBLite consensus disorder prediction 512 539 - -
Lele16g0520 555 MobiDBLite consensus disorder prediction 9 31 - -
Lele16g0520 555 FunFam Non-specific serine/threonine protein kinase 89 201 - -
Lele16g0520 555 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Lele16g0520 555 SUPERFAMILY Protein kinase-like (PK-like) 92 468 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0520 Lele-ChrLele16 2876524 2881723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0520 1 512 AGC Kinase Gene Family AT2G20470 78.967 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lele16g0520 Pkinase 6.9e-65 CL0016