Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0518 ATGGCCGACGACGAAGGAACTCGGAGGCAGAGAAGCGAAGATAAGGAAGAAGATGAAAATGAAAGCTGCAGAGGAATTAGAGTGCGTGGTATGCAATTCGCCTACGATGGGCAACCGCCACTCTTTGTCGACTTCAACCTTAAGATCTCTACTGGATCGCGATGCCTTCTGGTGGGTGCCAATGGATCCGGGAAGACCACTTTGCTGAAAATTCTGGCTGGCAAGCATATGGTCGGAGGAAGAGATGTTGTACGGGTACTAAATTGTTCCGCTTTCCACGATACTCAACTGGTTTGCAATGGTGATCTCGCCTATTTGGGAGGATCCTGGAGTAAAACCGTTGGCTCAGCAGGAGAAATTCCACTCCAGGGAGACTTCTCAGCTGAACATATGATATTTGGAGTTGAGGGCACAGATCCTGAAAGGAGAGATAAGTTGATTGAGTTGCTTGATATAGATCTACAGTGGCGAATGCATAAGGTATCTGACGGGCAGCGCCGCCGAGTGCAAATTTGCATGGGTCTTCTTCATCCATATAAGGTTCTCTTGCTGGATGAGGTTACTGTGGACCTAGACGTTGTGACTAGGATGGATTTGCTGGACTTCTTCAGGGAAGAATGTGAGCAGAGAGGAGCGACAATTGTGTATGCAACTCATATTTTTGATGGCCTGGAGACATGGGCCACTCATCTAGCATACATACAAGACGGTGAACTGAGGAGGGCGGAAAAGTTATCAGATATTAGTGAGTTGAAGCGTTCGTCTAATCTGCTCTCTGTTGTTGAGTCATGGCTCCGTGCTGAGACAAAGCTTGAAAAGAAGAACCCTGTAAACCATGCTTCCAGCGTCCAAAAGACTTCTTTTGGCAGTTCTCCTTTTATTTCATCAAGACACATGGCATACTATCGGTAG 912 0.4693 MADDEGTRRQRSEDKEEDENESCRGIRVRGMQFAYDGQPPLFVDFNLKISTGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNCSAFHDTQLVCNGDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPERRDKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEVTVDLDVVTRMDLLDFFREECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLSDISELKRSSNLLSVVESWLRAETKLEKKNPVNHASSVQKTSFGSSPFISSRHMAYYR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0518 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 250 IPR027417 -
Lele16g0518 303 Gene3D - 24 284 IPR027417 -
Lele16g0518 303 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 26 265 - -
Lele16g0518 303 Pfam ABC transporter 44 188 IPR003439 GO:0005524
Lele16g0518 303 MobiDBLite consensus disorder prediction 1 22 - -
Lele16g0518 303 FunFam ABC transporter I family member 21 126 298 - -
Lele16g0518 303 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 261 IPR003439 GO:0005524
Lele16g0518 303 SMART AAA_5 51 255 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0518 Lele-ChrLele16 2872118 2874814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0518 10 239 Calmodulin-binding Proteins AT2G36910 21.285 1.29e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1911 13 26790490 26792993 Lele16g0518 16 2872118 2874814 hybridization
Lele14g1847 14 25139421 25142107 Lele16g0518 16 2872118 2874814 hybridization