Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0512 ATGCCGTCCTTGATTTCTCCTGGGAAAATCCATCGCTTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGCCCCTTCTACGACTTCACCGCAATTATTGGTCCCAATGGTGCTGGCAAGTCCAACCTTATGGACGCCATTAGCTTTGTGCTTGGTGTGAGGACAGGTCACCTGCGTGGTGCTCAACTCAAGGACTTAATCTACGCATACGACGACAAGGAAAAGGAGCAGAAGGGACGGAGGGCGTTCGTTCGTCTGGTTTTTCAGCTGGGCAATGGGTCGGAGATCCAGTTCACAAGGACTATCACGAGCGCCGGCGCGAGCGAGTACCGCATTGATGGGAGCCTCGTAACGTGGGATGTGTATAATTCTAGACTAAAGTCACTTGGGATTCTTGTCAAGGCTCGCAATTTCCTCGTGTTTCAGGGTGACGTGGAATCCATTGCATCGAAGAATCCGAAAGAGCTTACTGCCCTTCTTGAGCAGATATCTGGCTCTGATGAGCTCAAGAGAGACTATGAACGATTTGAAGAAGAAAAGGCCACAGCTGAAGAAAAATCAGCCCTTGTTTATCAGAAGAAGAAGACTGTAGTTATGGAGAGAAAGCAGAAGAAGGAGCAAAAGGAAGAAGCAGAGAAACATATTCGTTTGCAGGATCAACTGAGAACTATAAAGAAAGAGCATTTCTTGTGGCAGTTGTTCAATATAGAAAGAGATATAGAAAAGACGTCTGATGATCTTGAGGATGAGAAAAGAAGTCGTGAAGGCGTCATGGAAGAACTGGAAAAATTTGAAGCCGAAGCTAGTAAAAAGAAGAAAGAACAGGCAAAATATCAGAAAGAGATTACCCAATGCGAAAAGAGAATTGTTGAGAAAAGCAACAAACTTGACAGGAATCAACCTGATCTTCTGAAGATGAAAGAGGAAATGGCTCGTATTAACTCAAAAATAAAAAAAGGGAAGAAGGAGCTAGACAGAAAAAAGGAAGAACGGAGAAAACATGCTAATGATATAACAGAGCTACAGAGGGGTATACGAGATCTCTCTGCCAAATTGGAAGATCTACAGGCAAAGAGTCGAGATGTTGGTGATGAACTAAAGTTAGATGGCAGTGACTTGGAAGAATATTTTCGAATGATTTCTTGTGAAATCCAGACTATCGTTTGTGTTGTGTGCATGAAAACTAGTCAACTTGTTTTTAATTGCTTTATGCTTGATTGCCCTGGTTTTGGAGATGATTGTGAAGCTGGGATGAAAACTGCAAAGCTAAGGGAGGAGAAAGAACTTCTGGATAGGCAACAACATGCAGATAGTGAAGCTAAAAAAAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCGCACTAGGCTGAACAAAATTCTTGATAATTCTACAAAACATAAGGATGACCTTGCAAATTTGATTAAGGAATTGCATGTGATGCAGGACAAACATCGAGATTCCAGGGAAAAGGAGGAGCTATTGGGGGTGGGTAGGGCATACAGTTTTGCAGGCTTTGTTGTGCCTATGCTTTATGAATCTGCTGTTGATATTCGTTATACTTTTCTTGTGATGAATTTCTGGATTTTTAAAGCTGTGTTAATTTTCATATGCAGGAAGAAATATGAAAATTTGAAGTTGAAAATTGGTGAAATAGAAAATCAACTTCGTGAACTGAGGGCTGATCGATATGAAAATGAGAGAGATGCAAAACTGTCTCAAGCTGTGGAGAGCCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGGTCTTTGTAGGCCGACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTTTGCAATCAGTTCGCGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTGGTTTTTGATGTTATTCAATATCCTTTTTGA 2073 0.4129 MPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVFQLGNGSEIQFTRTITSAGASEYRIDGSLVTWDVYNSRLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYERFEEEKATAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQDQLRTIKKEHFLWQLFNIERDIEKTSDDLEDEKRSREGVMEELEKFEAEASKKKKEQAKYQKEITQCEKRIVEKSNKLDRNQPDLLKMKEEMARINSKIKKGKKELDRKKEERRKHANDITELQRGIRDLSAKLEDLQAKSRDVGDELKLDGSDLEEYFRMISCEIQTIVCVVCMKTSQLVFNCFMLDCPGFGDDCEAGMKTAKLREEKELLDRQQHADSEAKKNLDENLQQLRNRESELNSQEEQMRTRLNKILDNSTKHKDDLANLIKELHVMQDKHRDSREKEELLGVGRAYSFAGFVVPMLYESAVDIRYTFLVMNFWIFKAVLIFICRKKYENLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTGLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDVIQYPF 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0512 690 SUPERFAMILY Smc hinge domain 564 689 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele16g0512 690 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lele16g0512 690 Coils Coil 198 225 - -
Lele16g0512 690 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 382 - -
Lele16g0512 690 Coils Coil 170 190 - -
Lele16g0512 690 SMART SMC_hinge_2 600 682 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele16g0512 690 Pfam SMC proteins Flexible Hinge Domain 600 689 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele16g0512 690 Pfam RecF/RecN/SMC N terminal domain 10 152 IPR003395 -
Lele16g0512 690 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Lele16g0512 690 Gene3D - 661 688 - -
Lele16g0512 690 Gene3D - 579 660 - -
Lele16g0512 690 Coils Coil 487 507 - -
Lele16g0512 690 Coils Coil 558 585 - -
Lele16g0512 690 Coils Coil 237 299 - -
Lele16g0512 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 268 IPR027417 -
Lele16g0512 690 Coils Coil 307 369 - -
Lele16g0512 690 Coils Coil 438 472 - -
Lele16g0512 690 Gene3D - 232 392 - -
Lele16g0512 690 Gene3D - 8 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0512 Lele-ChrLele16 2814594 2819586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0512 8 112 Structural Maintenance of Chromosomes family AT5G61460 33.929 7.34e-08 53.9