Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0501 ATGGGCACAGCTTTCTTGCTCATCGGCTACTTCACTTTCGTCACCAAATGCTTCTCTTACTGGCAACACCTCAACCCTCTCACGTGGCTCTCCATTCTTCGTCCAAGACACAGCGAAGAACCCTTCATAGCTCTCTCGCCCACCATGTGGAATCGTGGCCTTGATGAATCCATCCTCAGAAAAATACCCACATTTCAGTTCGTCAAAGGTGGGGATCATGATGGTAGTGTGAGTACTGTGTATGGGTGTGTGGTGTGTTTGAGTGAGTTTCAGCAACAGGACATGCTCAAAGTTCTACCCAAATGCAGCCATGCGTTTCACTTGGACTGCATCGATATTTGGCTCCAGAGCAACGCGAATTGTCCTCTTTGCAGGTCAAGCATTTCTGGCACCACGCGTCCTCCATTGGACCATATTATAGCGCCGAGCTCTTCTCCTCAGGATTCTCAGCTACTCTCCAATATGGCCAGTGATGAAGACTTTGTGGTCATTGAATTGGGGGGAGAAGATGGCGGATCGCTGTCCCTGAGGCGGCATGAACGGAATCAGTCGAGCGGGGGAAGCTTGGCACAGAGTACAAGTCACTGTACGAGGAAGATGAAATCGAGGAAGTGGCAGCGTGTGTCCATCATGGGAGATGAGTGTATTGACACGAGGAAGAAAGATGAACAGTTATGTATTCAGCCACTCAGGAGATCTTTCTCCATGGATTCTGCAAATGATAGGCAAGTTTACTTGGAAGTTCGAGCCATTACACAGCAGCCACACGGGCATCATCAAAACGAGGCAAGTGGGAGTGAAGACAGTAACAGTAATTAA 819 0.4884 MGTAFLLIGYFTFVTKCFSYWQHLNPLTWLSILRPRHSEEPFIALSPTMWNRGLDESILRKIPTFQFVKGGDHDGSVSTVYGCVVCLSEFQQQDMLKVLPKCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRPPLDHIIAPSSSPQDSQLLSNMASDEDFVVIELGGEDGGSLSLRRHERNQSSGGSLAQSTSHCTRKMKSRKWQRVSIMGDECIDTRKKDEQLCIQPLRRSFSMDSANDRQVYLEVRAITQQPHGHHQNEASGSEDSNSN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0501 272 MobiDBLite consensus disorder prediction 173 203 - -
Lele16g0501 272 MobiDBLite consensus disorder prediction 254 272 - -
Lele16g0501 272 SMART ring_2 83 124 IPR001841 -
Lele16g0501 272 Pfam Ring finger domain 83 125 IPR001841 -
Lele16g0501 272 MobiDBLite consensus disorder prediction 178 196 - -
Lele16g0501 272 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Lele16g0501 272 MobiDBLite consensus disorder prediction 253 272 - -
Lele16g0501 272 PANTHER RING-H2 FINGER PROTEIN ATL16 1 263 IPR044600 GO:0016567|GO:0016740
Lele16g0501 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 130 IPR013083 -
Lele16g0501 272 SUPERFAMILY RING/U-box 82 129 - -
Lele16g0501 272 FunFam E3 ubiquitin-protein ligase ATL6 44 131 - -
Lele16g0501 272 CDD RING-H2_PA-TM-RING 83 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0501 Lele-ChrLele16 2772761 2773579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0501 1 249 C3H Transcription Factor Family AT1G04360 43.617 4.45e-64 203