Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0493 ATGGAAGGAAACCAGAAGCATCATGGAGACGAAAACCTGAGCTTTGAGGAGCATTCATGGGCAAGTTCATGGCCGGCAAGAAACTACGCGTGTAGCTTCTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTGGGGGGCCATATGAACGTGCACAGGAGAGATAGGGCTAGATTGAGATCTGGCATAATACCCCCCTTATGGCTTAATTCTGAATCTGTTAAACCTAACCCTATAACAACCTCTAGGCCACCTTCTAACCCAACTTCCTTATCTGCTCATGAGCTTTTCTATAACGACGATTACTCACATCGCTCTGCAGTACTCCCCCATGCCCCTTCTCTCACTTTGTCTTCCTCGTCGACCTCCTTTGCTTCTGCGAGTGATGATAAGAAACCACCAATGCTCTTCACGTCTTCTTCCAAGCTCCCTCTTCTGAGCCCTCAAGGCAGAGAGATGATCATGAATGGTGACAACACGAGGAGTGGATTTAGATCAGTTGACGAGGAACTGAAGGGCTGTGCAAAGGAGAAAGGGCTCAAGGGTTTCGAGAACATTAAGGAGAATAACAATAATAATATCACGTTGGAGCTGGGTTTAGGGTTACTTCAGCACCCAAAGGAGCAAATAGATTTGGAGCTTCGACTCGGCCATTTCTAG 657 0.4718 MEGNQKHHGDENLSFEEHSWASSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSGIIPPLWLNSESVKPNPITTSRPPSNPTSLSAHELFYNDDYSHRSAVLPHAPSLTLSSSSTSFASASDDKKPPMLFTSSSKLPLLSPQGREMIMNGDNTRSGFRSVDEELKGCAKEKGLKGFENIKENNNNNITLELGLGLLQHPKEQIDLELRLGHF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0493 218 Pfam C2H2-type zinc finger 29 53 - -
Lele16g0493 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Lele16g0493 218 MobiDBLite consensus disorder prediction 118 142 - -
Lele16g0493 218 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Lele16g0493 218 Gene3D Classic Zinc Finger 13 61 - -
Lele16g0493 218 PANTHER OS07G0101800 PROTEIN 5 217 - -
Lele16g0493 218 SMART c2h2final6 29 51 IPR013087 -
Lele16g0493 218 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0493 Lele-ChrLele16 2722201 2722857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0493 24 218 C2H2 Transcription Factor Family AT2G42410 37.245 9.45e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0493 zf-C2H2_6 5.9e-07 CL0361