Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0485 ATGGCGACGGAAGAGCCCGCAGTAGTTGTGGAATCTGAACAAGAACCAGCTGTTGCCGAGCCAGCTGAGGAGAAAGAGGCCGCAGGTGCTGGCGGTAAGACCAAGAAAGCTAAGGAGCCGAAGCCTAAGAAGGTTGCTGCTCCTAAATCTCGAAACCCTCCTGCGCATCCTCCTTATGAAGAGATGATCAAGGACGCAATTGTTACGCTGAAGGAGAGGACTGGTTCGAGCCAGTACGCGATTACCAAGTTTATGGAAGAGAAATACAAGCAGCTTCCGTCCAGCTTCAGGAAGATCGTGTTACTCCAATCAAAGAAGCTCGTGGCTGCCGGAAAGCTTGTTAAGGTCAAGGGCTCATTCAAGCTTCCCTCTGTTAAGTCATCGGCACCAAAGGGAACTGGGAATTCTGCTTCAGCAAGGAAGCCTGCAGCTGCTAAGCCCAAGGCTAAACGAGCTGCTAAGCCGAATGAGACGAAATCAATCAAGGCGGCAACTAAGGCTCGTCCTAAGACTAAAGTGGTTGCCAAGGCAAAGCCTAAAGCGGCTGCCAAGCCGAAGGCCGCCGCTCCTAAACCTAAACCTAAAGCTGCTGCTACGAAGCCCAAGGCTGCTGCGGCGAAGCCTAAGGCTGCTGCGTCGAAGCCAAAAGCTGCAGCTAAGCCCAAGGCTGCAGCAAGACCAAAGCCCAAGGAGAGACCTGCCAAGGCGTCGAGGACGTCGACCAGGACATCCCCGGGTAAGAAGGCCTCGGCACCAAAAAAGGCCGCTGCTTCCAAGAAAGCTCCTGCTAAAGGCGTTAAGCCTAAGAGTGTGAAGTCTCCGGCAAAGAAGGCTCCGACAAAGAGAGGAAGGAAGTGA 858 0.5361 MATEEPAVVVESEQEPAVAEPAEEKEAAGAGGKTKKAKEPKPKKVAAPKSRNPPAHPPYEEMIKDAIVTLKERTGSSQYAITKFMEEKYKQLPSSFRKIVLLQSKKLVAAGKLVKVKGSFKLPSVKSSAPKGTGNSASARKPAAAKPKAKRAAKPNETKSIKAATKARPKTKVVAKAKPKAAAKPKAAAPKPKPKAAATKPKAAAAKPKAAASKPKAAAKPKAAARPKPKERPAKASRTSTRTSPGKKASAPKKAAASKKAPAKGVKPKSVKSPAKKAPTKRGRK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0485 285 MobiDBLite consensus disorder prediction 165 179 - -
Lele16g0485 285 SUPERFAMILY "Winged helix" DNA-binding domain 52 124 IPR036390 -
Lele16g0485 285 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g0485 285 MobiDBLite consensus disorder prediction 270 285 - -
Lele16g0485 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g0485 285 MobiDBLite consensus disorder prediction 119 285 - -
Lele16g0485 285 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele16g0485 285 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele16g0485 285 PRINTS Histone H5 signature 196 215 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele16g0485 285 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele16g0485 285 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele16g0485 285 MobiDBLite consensus disorder prediction 1 61 - -
Lele16g0485 285 CDD H15 53 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g0485 285 FunFam Histone H1 50 135 - -
Lele16g0485 285 Gene3D - 51 129 IPR036388 -
Lele16g0485 285 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g0485 285 MobiDBLite consensus disorder prediction 150 164 - -
Lele16g0485 285 MobiDBLite consensus disorder prediction 18 46 - -
Lele16g0485 285 PANTHER HISTONE H1 30 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0485 Lele-ChrLele16 2662195 2663150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0485 50 134 Single Myb Histone (SMH) Gene Family AT1G49950 35.165 8.17e-07 47.8