Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0484 ATGGCGGATATTGAAGCAGCAGATGTCGCACCCGGACAGCCGAAGAAGAGGACATTCAAGAAGTTCAGTTTCAGAGGAGTCGATCTGGATGCGCTCCTGGACATGTCTACTGATGAGCTTGTCAAACTCTTTACTGCTCGGGCACGCAGAAGATTCCAACGCGGTCTGAAGCGAAAGCCCATGGCATTGATCAAGAAGCTGCGTAAAGCGAAGCGGGAGGCTCCACCTGGTGAGAAGCCGGAACCAGTAAGGACTCACCTCCGCAACATGATCATTGTACCTGAGATGATTGGTAGCATTATCGGTGTTTACAACGGCAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGTCACTATCTGGCTGAGTTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGGCCAGGCTGCTATCTGAATGTTCTTCGCTTGTCAAGTACTGGAAGAGACAGCAGAATGGCGTAA 474 0.4852 MADIEAADVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGCYLNVLRLSSTGRDSRMA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0484 157 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 FunFam 40S ribosomal protein S15 9 146 - -
Lele16g0484 157 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 12 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 SUPERFAMILY Ribosomal protein S19 56 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 Gene3D 30s Ribosomal Protein S19; Chain A 10 149 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele16g0484 157 TIGRFAM uS19_arch: ribosomal protein uS19 19 140 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lele16g0484 157 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0484 Lele-ChrLele16 2650689 2654330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0484 1 140 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.429 1.15e-82 238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0484 16 2650689 2654330 Lele16g0484 16 2650689 2654330 ECH
Lele13g1948 13 27038269 27040173 Lele16g0484 16 2650689 2654330 hybridization
Lele14g1877 14 25355973 25358026 Lele16g0484 16 2650689 2654330 hybridization