Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0483 ATGGGATTCTCTGTTCCTGGGTCTTAAGCTATCATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAAAGCAGCCATAGAGTTCTAAGTCTGTTGTCTCAGCGCCAGGATCAGGTTCCTTATGGCAAATTAATGGTGGAAACTGGCGAGGCTGTGTCCAGGTTCAAGAAAGTTGTTTCCTTGCTCAATAATGGAGTGGGTCATGCAAGAGTCAGGAAGCTCAAAAAACTTCAAATCCCTTTCCCTCAAAGTATTCTCTTGGACAAACCAAATTCCAAATCAAACCATTGTCCCAAAATTCTGCTGTCTCTGCAACCTAGCTCTTCTGACAATTCAATTCAGGAGTTGGCCTCAAACACTGGAAACTCACTGTCTCTGGGAAAACCATCTTTGGAATTAAGTTCAAGTGGCAAAAATCCCCTACACCTTGCCCCTCCAGCGGCATCGCCACACTATCACTTACTTCAGCAGCAGCAACAAAGAATATTGCTACAACAGCAACAAATGAAACACCAAGCAGAAATGAGGTTTCGAAAGAACAATAGTGGAATCAATCTGAATTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTAAGCGTAGATGGAAGCGTAGCTAACTTGGATGGGACTGGGAGTGCCTTCCATTTAATTGAAGCTCCACTCTCTTCAGATCAGAATTCACAACACCACAAGAGAAAGTGTTCTGGCAGAGATGAAGGGGGTGGGAAATGTTGGAGCAGTACTAGATGCCATTGCTCAAAGAAGAGAAAGCATAGAGTGAAGAGGTCAATCAAGGTGCCTGCCATTAGCAACAAGCTTGCTGATATACCCCCTGATGATTATTCATGGAGAAAATATGGGCAGAAGCCAATCAAAGGCTCTCCTCATCCTAGAGGATACTACAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCACGTGGAGAGGTGCTTGGAAGAGCCTTCAATGCTAAGCGTTACATATGAAGGTGAGCACAACCACCCTAGAATATCAGCACAATCTGCAAATGCATGA 1068 0.4476 MGFSVPGSXAIMEEVEEANRAAVESSHRVLSLLSQRQDQVPYGKLMVETGEAVSRFKKVVSLLNNGVGHARVRKLKKLQIPFPQSILLDKPNSKSNHCPKILLSLQPSSSDNSIQELASNTGNSLSLGKPSLELSSSGKNPLHLAPPAASPHYHLLQQQQQRILLQQQQMKHQAEMRFRKNNSGINLNFDSSSCTPTMSSTRSFISSLSVDGSVANLDGTGSAFHLIEAPLSSDQNSQHHKRKCSGRDEGGGKCWSSTRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLSVTYEGEHNHPRISAQSANA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0483 355 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 352 IPR044810 GO:0003700
Lele16g0483 355 MobiDBLite consensus disorder prediction 112 161 - -
Lele16g0483 355 SUPERFAMILY WRKY DNA-binding domain 285 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele16g0483 355 ProSiteProfiles WRKY domain profile. 282 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele16g0483 355 SMART WRKY_cls 287 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele16g0483 355 Pfam Plant zinc cluster domain 241 285 IPR018872 -
Lele16g0483 355 Gene3D WRKY domain 272 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele16g0483 355 FunFam WRKY transcription factor 65 271 348 - -
Lele16g0483 355 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele16g0483 355 MobiDBLite consensus disorder prediction 112 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0483 Lele-ChrLele16 2648221 2649958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0483 12 352 WRKY Transcription Factor Family AT2G30590 55.263 4.80e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele16g0483 WRKY 3.4e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1949 13 27041687 27043661 Lele16g0483 16 2648221 2649958 hybridization
Lele14g1878 14 25361277 25363336 Lele16g0483 16 2648221 2649958 hybridization