Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0480 ATGATACGTAGACGAGAGGGAACTGATTGGGCTTGTAACAAAACGATGGCGAATCAGGTAGTAAAAGCGAAGAGGGAAGCGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGACGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATGACAGATGAGGAATTAGAACATTGTCCAATCTGTAATATTGATCTGGGCTGTGTTCCGCTTGAGAAATTGAGGCCAGACCACAATATACAAGATGTAAGAGCTAAAATTTTCCCTTTGAAGGGAAGAAAGGCAAAAACACCTGAGGCTGTTCCTTCTATAGCAATACCAGCCAGAAGAAAGGAGAGATCGCTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGTAACCATGACTGGGAGAAGAACTAAACCTACTAGAAAGGTCAGCGGTCTACGAGCCTCTAGTTTTTCCATTGAAAAGCCTGTTAAAAAAGAGGAATCGGTAGAAGATCATACAGAGAGTTCGAGCTCGCCAGACACTTTGAACAAGTTTACTCAGAATACCAGACAGAGTTTGTCCCCTCTTGAGTCTAACCGATCCTTACACACCAAAGAGGCAGATAATGGAGCAGAACCATGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTGGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATCCTAAACTAGAACCCGTGCAAATAAATGAGAATGACTCTCAAGTGCAAAAACCCAAAAATAAAGAGAATAAGCGCAAAGCGAAAGTTGAGAATGAAAAAGTAGACACTGATCCCATCTCTTCAAATACAGCAAAGCCTAATAAATTGCGCAAAGTTCGTCGTAAAAGGGAGCCTCTTTTTGGAGAACCAGGCATATCACCTCAAGCTGTTCTGGATGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTCGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCACCCATGCCCCAAATTCCTGCAAGTTATTTGAGAATAAAGGATGGAAGTTTACCTGTGTCATTTATCCAAAAATACCTAATGAAGAAACTAGAGCTGAGCAGTGAAACAGAGGTTGAGATTAAATGCATGGGGCAACCAGTGGTCCCGACGCTGCAACTATGTAGTTTGGTTGACTTGTGGCTGCAGACAGCATCCACGACACAGCGAGTTCCAGCAACCATTGGGTCCTCAGCCAAGGATTTTGTAATGGTTCTAGCATATACGCGCAAGGTTCCACAACATCGATCTGCTTCTCCCACTATGTCTACATCTCTAGCATAA 1368 0.4298 MIRRREGTDWACNKTMANQVVKAKREAIVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKMTDEELEHCPICNIDLGCVPLEKLRPDHNIQDVRAKIFPLKGRKAKTPEAVPSIAIPARRKERSLSSLVVSTPRVSTQVTMTGRRTKPTRKVSGLRASSFSIEKPVKKEESVEDHTESSSSPDTLNKFTQNTRQSLSPLESNRSLHTKEADNGAEPWEAKLDLWKPLNCLVEVASRSKSFKSSVQGSDPKLEPVQINENDSQVQKPKNKENKRKAKVENEKVDTDPISSNTAKPNKLRKVRRKREPLFGEPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDAPMPQIPASYLRIKDGSLPVSFIQKYLMKKLELSSETEVEIKCMGQPVVPTLQLCSLVDLWLQTASTTQRVPATIGSSAKDFVMVLAYTRKVPQHRSASPTMSTSLA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0480 455 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Lele16g0480 455 MobiDBLite consensus disorder prediction 129 214 - -
Lele16g0480 455 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Lele16g0480 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 119 IPR013083 -
Lele16g0480 455 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Lele16g0480 455 MobiDBLite consensus disorder prediction 129 158 - -
Lele16g0480 455 MobiDBLite consensus disorder prediction 241 300 - -
Lele16g0480 455 MobiDBLite consensus disorder prediction 265 285 - -
Lele16g0480 455 MobiDBLite consensus disorder prediction 180 205 - -
Lele16g0480 455 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 16 439 IPR044807 GO:0004842
Lele16g0480 455 MobiDBLite consensus disorder prediction 241 264 - -
Lele16g0480 455 MobiDBLite consensus disorder prediction 164 179 - -
Lele16g0480 455 SMART ring_2 34 74 IPR001841 -
Lele16g0480 455 SUPERFAMILY RING/U-box 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0480 Lele-ChrLele16 2627068 2631465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0480 17 362 C3H Transcription Factor Family AT2G30580 55.587 1.85e-117 345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1280 06 8155041 8165261 Lele16g0480 16 2627068 2631465 CCT
Lele07g1482 07 9040489 9043865 Lele16g0480 16 2627068 2631465 CCT
Lele08g1274 08 8106148 8117740 Lele16g0480 16 2627068 2631465 CCT
Lele13g1952 13 27056538 27058744 Lele16g0480 16 2627068 2631465 hybridization
Lele14g1881 14 25382179 25386665 Lele16g0480 16 2627068 2631465 hybridization