Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0461 ATGTCCAATTCTGCTTCTTTGTCTGAAGAAGCCACCGTCTCTTTTGGTACTAGAGTCCAGAACTTCACTGCATCAAGTCATATCGTTTCAAACACCATCCCTCCTCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAGGTGATTGCGTTATCCCCAAAGACCCTTCTGGCTACGAATAGATATGTGTGTGAAATCTGCAAAAAGGGTTTTAAGAGGGATCAGAACCTTCAGCTACACAGGAGAGGGCATAACCTTCCATGGAAACTGAAACAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTTTATGTTTGCCCCGAGCCTTCGTGCGTTCACCACAATCCCTCGAGAGCTCTGGGTGATCTCACTGGTATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCAAAAGTGCTCCAAAACCTACGCTGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATACAGGTGTGATTGCGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGCTGCCCTGGCTGATGAAAGTGCGAGACTCGCAGCTAATCAACTAGCTTCCACAAACCCAATGTTATTTCAACCTCTCTTCCCTTTCCAGAATCAAATCATGATGAATCCCTGGGACCCATCTCAAGGAAACCCTAACCCTAGTAGCAACATTGATGGCGTCCAAATCAAGACCGAAGCTCAGTGTTTTCAGGTCCCATCCCTCTCTTCTCCGCCATTTCTTCAAGTGCAGCAGCAGAATCAAAAGAACATGATAAACCCATTCTTAGGAACTCTCCATGTGGCCTCAATCGCCGCCACGTCGGCCCACCTGTCAGCCACTGCGCTCCTCAAAAAGGCTGGAACAGTGGGTTCCGCTGCTATCACAGGTCCAGGTGCTGCCGCTGCAGCCGTTGGTGGACCACACTCAACAATGGCTCACGTGACTCAGCCAAGCATGGGCGAGTTCGGACTTGCGACTCATCAGCAGATCGACTCGGCGGGTCACGACTACATTGGAGCGCTCGTGACCCGGAATCAAAGTGAACGTCTGACCAGGGACTTCCTCGGCCTGACCGCCGCTGTAGACGGCGGAAGAAATGGTGGCCTCGTTGACGTTGGCCTGAACGCGAAGGATATGCTGATGTTCACGGGTGGCGTAGAGTATGATCAGTATCTTCCATACGATCACCATCATCACTCGCTCTTCACGTCCCAACAAGATTTTGGATTCTTCGGGACAGCCACTACCCCGGAGACGATGTGGGGGACCTCTTGA 1341 0.4981 MSNSASLSEEATVSFGTRVQNFTASSHIVSNTIPPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRYVCEICKKGFKRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCQKCSKTYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCAALADESARLAANQLASTNPMLFQPLFPFQNQIMMNPWDPSQGNPNPSSNIDGVQIKTEAQCFQVPSLSSPPFLQVQQQNQKNMINPFLGTLHVASIAATSAHLSATALLKKAGTVGSAAITGPGAAAAAVGGPHSTMAHVTQPSMGEFGLATHQQIDSAGHDYIGALVTRNQSERLTRDFLGLTAAVDGGRNGGLVDVGLNAKDMLMFTGGVEYDQYLPYDHHHHSLFTSQQDFGFFGTATTPETMWGTS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0461 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele16g0461 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 387 IPR031140 -
Lele16g0461 446 SMART c2h2final6 147 167 IPR013087 -
Lele16g0461 446 SMART c2h2final6 71 93 IPR013087 -
Lele16g0461 446 SMART c2h2final6 112 142 IPR013087 -
Lele16g0461 446 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Lele16g0461 446 MobiDBLite consensus disorder prediction 27 54 - -
Lele16g0461 446 Gene3D Classic Zinc Finger 140 204 - -
Lele16g0461 446 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele16g0461 446 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Lele16g0461 446 Gene3D Classic Zinc Finger 50 118 - -
Lele16g0461 446 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lele16g0461 446 FunFam protein indeterminate-domain 12-like 50 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0461 Lele-ChrLele16 2478886 2481496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0461 10 434 IDZ Gene Family AT4G02670 49.887 6.74e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0461 zf-C2H2 0.00059 CL0361