Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0460 ATGGATTACCCGTATCTAGTGAAAGAAGAGTACTTGGAAGCGACTTCATCTCATTCGGGAGGTGAAGCATCGACAATTGCCCCTCCGCAGCCACTGGAGGGGCTTCACGAGCTGGGGCCACCACCATTTCTGACCAAGACATTCGACGTGGTGGACGACCCAACTACCAATCATATGGTTTCTTGGAGCAGAGGGGGCGCTAGTTTTGTGGTTTGTGATCCACATGCCTTCTCTACGAGTCTGCTTCCCAGATACTTTAAGCACAACAATTTCTCAAGCTTTGTTAGGCAATTGAACACTTATGGATTTAGGAAAATTGATCCAGACAGATGGGAGTTTGCAAATGAAGGATTTCTGAGAGGCCACAGGCATCTCCTGAGGAACATTAGGAGAAGGAAGGCACCTGCTACTTTGAGTCTTTCCCAACAAGCACAACAGCAAGGCCATTGTGTTGAAGTAGGAAGGTTTGGACTAGACGGGGAAATTGACCGTTTGAGGCGAGACAAGCAAGTGTTAATGATGGAGCTGGTGAGGCTTAGGCAGCAGCAACTGAACACTAGATCATACCTTCAGGCAATGGAACAAAGGTTACAAGGCACAGAAAGAAAGCAGCAACAGATGATGGCTTTCTTGGCCAGAGCTATGAAAAATCCAGCCTTTCTCCAGCAGCTACTCCAACAGAAGGACAAGAGAAAGGAGCTCGAAGAAGCCATAACTAAGAAGAGAAGGAGGCCAATTGAGCAAGGACCAAGTTGTGTTGGGGAATCAAGCAGTGGAAGAGAAGCAATGAACTCTATAAAAGCTGAGCCTTTAGAATTTATTAACTATGGGTTTGAAGTGTCAGAACTGGAAGTGTTAGCTATGGAAATGCAGGGTTATGGTATGGGGAGAAGAGAACAGGAGGCGCCAGAAGAACCCCGGGAGAGGCTGGGAAAAGAACTCGATGAGGGTTTCTGGGAAGAACTGTTCAGTGAAAATTTTGAGGGTGAAATAGACATTCCAAGCACTGAAGGTGAGGATGAAGATGTTAATGTCTTGGCCAATCGCTTAGGCTACTTGGGTTCGAGTCCTAAGTTGCAGCTGGTGATTGCTCAAGAAATCTGTGGTAGTGATAACGGTCATAATATTGATCTCAAGATTATGATCAGATGCTGTAAAGTGGACAAGAAGTAG 1173 0.4604 MDYPYLVKEEYLEATSSHSGGEASTIAPPQPLEGLHELGPPPFLTKTFDVVDDPTTNHMVSWSRGGASFVVCDPHAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKAPATLSLSQQAQQQGHCVEVGRFGLDGEIDRLRRDKQVLMMELVRLRQQQLNTRSYLQAMEQRLQGTERKQQQMMAFLARAMKNPAFLQQLLQQKDKRKELEEAITKKRRRPIEQGPSCVGESSSGREAMNSIKAEPLEFINYGFEVSELEVLAMEMQGYGMGRREQEAPEEPRERLGKELDEGFWEELFSENFEGEIDIPSTEGEDEDVNVLANRLGYLGSSPKLQLVIAQEICGSDNGHNIDLKIMIRCCKVDKK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0460 390 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 FunFam Heat shock transcription factor 1 36 133 - -
Lele16g0460 390 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 256 IPR027725 -
Lele16g0460 390 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 Coils Coil 162 182 - -
Lele16g0460 390 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele16g0460 390 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Lele16g0460 390 Gene3D - 36 133 IPR036388 -
Lele16g0460 390 Coils Coil 224 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0460 Lele-ChrLele16 2469185 2471527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0460 22 356 HSF AT3G22830 55.135 1.84e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele16g0460 HSF_DNA-bind 3e-31 CL0123