Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0415 ATGCAAAGATGCTCTGCGGCCCTGCATTTTCACCCTTCTAGGGCCGCTTCTTCATTTTCAGCTCTTCAGCAACGACTTCTTATCTCTCCAATGGCGTCGGTGGCTTTCAGAAATTTTGCTTCCAAACGTCTCTTCCCATTTTCTTCTCAAATCTACTGCTGTTCTCGAGCATCACTCTTTGATCATTCCCAGCTCTCTTTGTTGGTCCATGGAAACGAGACAGCCTCTGATTCCAATCCGTGGTGGAGGTCCATGGCCACTTTCACACGAACAAAACCCCATGTTAATGTGGGGACTATTGGGCATGTTGATCATGGGAAGACTACACTCACCGCAGCAATTACCAAGGTTCTAGCAGAAGAAGGAAAAGCTAAGGCTATAGCGTTCGATGAAATCGATAAGGCTCCTGAAGAGAAAAAGAGAGGAATCACAATTGCAACGGCACATGTTGAGTATGAGACAGCTAAACGACATTATGCACATGTAGACTGCCCTGGACATGCAGACTATGTTAAAAATATGATTACAGGAGCAGCCCAGATGGATGGGGGTATACTTGTTGTATCTGCCCCTGATGGACCCATGCCTCAAACCAAGGAACACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTGGTAGAAATGGAGCTTCGTGAGCTGCTAAGCTTCTACAAGTTCCCTGGCGATGAAATCCCTATTGTTAGAGGTTCAGCATTGTCTGCCTTACAGGGTACAAATGATGAGATTGGTAGAAAGGCCATTCTAAAATTGATGGATGCTGTGGATGAATATATTCCCGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTAATGCCCATTGAAGATGTATTCTCTATTCAGGGACGTGGAACAGTGGCCACTGGCCGTGTGGAACAAGGGACCATAAAAGTTGGAGAAGAAGTTGAGGTTTTGGGTCTAATGCAGGGTGGACCCCTGAAAACAACAGTGACTGGAGTTGAGATGTTTAAGAAGATATTGGATCAGGGACAAGCTGGTGACAACGTTGGTCTCCTTCTACGTGGTCTAAAAAGAGAAGACATCCAACGTGGTCAGGTCATTGCCAAGCCTGGTTCTCTAAAGACATACAAGAGGTTTGAGGCAGAAATTTATGTTCTCACGAAGGATGAAGGTGGGCGACACACTGCATTCTTCTCAAACTATAGACCTCAGTTTTACATGAGGACTGCTGATATCACTGGAAAGGTAGAATTGCCAGAAAATGTTAAGATGGTTATGCCTGGAGATAACGTTACTGCAGTGTTTGAGCTGATTTCACCTGTTCCGCTCGAAGCAGGACAAAGATTTGCTTTGAGAGAAGGAGGCAGAACAGTCGGTGCGGGTGTGGTGTCAAAAGTAATGACCTGA 1443 0.4546 MQRCSAALHFHPSRAASSFSALQQRLLISPMASVAFRNFASKRLFPFSSQIYCCSRASLFDHSQLSLLVHGNETASDSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAVFELISPVPLEAGQRFALREGGRTVGAGVVSKVMT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0415 480 Pfam Elongation factor Tu domain 2 309 379 IPR004161 GO:0005525
Lele16g0415 480 FunFam Elongation factor Tu 83 287 - -
Lele16g0415 480 CDD EFTU_II 295 383 IPR033720 -
Lele16g0415 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 310 IPR027417 -
Lele16g0415 480 Hamap Elongation factor Tu [tuf]. 83 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele16g0415 480 Pfam Elongation factor Tu GTP binding domain 92 285 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 288 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 PANTHER ELONGATION FACTOR TU-RELATED 87 479 - -
Lele16g0415 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Lele16g0415 480 FunFam Elongation factor Tu 290 420 - -
Lele16g0415 480 SUPERFAMILY Translation proteins 289 385 IPR009000 -
Lele16g0415 480 Gene3D Translation factors 290 420 - -
Lele16g0415 480 Gene3D - 84 287 IPR027417 -
Lele16g0415 480 CDD EFTU_III 386 475 - -
Lele16g0415 480 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Lele16g0415 480 Gene3D Translation factors 424 479 - -
Lele16g0415 480 CDD EF_Tu 93 287 IPR041709 -
Lele16g0415 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 389 479 IPR009001 -
Lele16g0415 480 Pfam Elongation factor Tu C-terminal domain 385 478 IPR004160 -
Lele16g0415 480 TIGRFAM small_GTP: small GTP-binding protein domain 95 231 IPR005225 GO:0005525
Lele16g0415 480 TIGRFAM EF-Tu: translation elongation factor Tu 84 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0415 Lele-ChrLele16 2245904 2252076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0415 90 478 Eukaryotic Initiation Factors Gene Family AT5G60390 30.963 9.60e-46 163