Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0414 ATGATTCCCTGGGGTGGAGTCAGTTGCTGTTTGAGTGCGGCTGCTCTTTACCTTCTCGGGAGAAGTAGTGGCAGAGATGCCGAAATTCTTAAATCCGTTAACCGGGTCAATCAGTTAAAAGAACTAGCGCAACTGCTAGATGCTGAAATATTACCTCTCGTTGTTGCAATTTCCGGAAGAGTTGGCTCTGAAACCCCAGTTAACTGTGAATTCAGTGGCTTAAGGGGTGTAATAGTTGAAGAAACGGCGGAGCAACATTTTCTTAAACACAATGATGCTGGTTCGTGGATACAAGATTCTGCTTTAATGCTATCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGAACTAGTCATGTTCACGTGGTTGGAGCTCGGGGTGCTACTGGTTTTGTATTACCTGTTGGAAGCGAAGCATTTGAAGAGTCAGGCCGATCACTTGTACGCGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGAGTACTTCCAATTGGCACATCCTTGACGGTTGTTGGTGAGGCTGCTAAAGATGACATTGGAACCATCCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCAAAAACAATTGATCAGCTCATTGCCAATCTTGGGAAATGGGCAAGGTGGTATAAGTATGCATCTGTGGGCTTGACCGTTTTTGGTGCTTATTTAATAGCCAAGCATGCTATTCAGTACATCTTGGAAAGACGACGCCGTTGTGAACTGCAAAAGAGGGTTCTTGCTGCAGCTGCTAAAAGGTCAGGACAAGATAATGAAGGTGAAAAGGCTGACAGTTCACCAGATGGTGCAAAAAGAGATCGCATAATGCCAGACTTATGTGTCATATGCCTTGAGCATGAGTATAATGCTGTATTTGTTCCGTGTGGGCACATGTGCTGCTGTACAACTTGTTCTTCCCACTTAACTAACTGTCCTCTATGCCGGCGGCGGATAGAGCAGGTAGTGAAGACTTGGTGGTGTAACGTCTTTACCTCTTTGGGGAAGTTACCCTGTTACAGTCATCCAGATGACCGCAGTGGATCCTCTGCAGTCTGCCCACGGTTCCCTCACAATGGGGGATCCAAGGAGCCTCATGAGGATAATATAAGATGCTATTGTGGAAAATGGAAAATGGATGAACTTCAAAAAGGGGAATCTTTGCCCAGAAAAAACAATCAAATTAAGGACCTAATACTTGGCTTTGGGAGCGCTTGGTTTCCTAGAAACCTCACTTCCACTCGGAATGGATGCAGTTCCAAACTCAGCCCGGGATCTTCTCCTTCTTGCCTTAAGCCTTTTAAAGTCTACATGGAGAGAAACAACCACCCAAACCATTCTTCCATGTGCAGGAAAATCCGTCAAGCACTGGCGAACAGTTCCGCCGGGCGAACTATTCATCGCATCTCACACCATCATCAGCAAGAACCTTCTGGTACTCCGTTGCCTCCACCTCGACATATCAGAGGAAATTATAATGGCGAAGGGAACGGAGCCATTCCCATCAACTTCGTGGATCACCCGAACCCGACTTTCAATGGGCAGGGACAAGCGGGCAAAGTTGCCACCAGGATCGAACCTGAACGACTACATTATGCTTCTGGGAGGGGCGAAGAGAAAGGCAAGTCTACGGCGCGGGAATTTGGGCAACAACATGAGAAGAAGGATATGAATTATGTTTTTGGCGAGTTCATTCAAAGGGCTAGGGAGAAGTTAAGAACTGTGTCCAACATTGGGAAGGCGCATCAGAGCAAGCCTGCACAGGACGAGGCTAGTCAGAATGTTGCCAGGAAAAAGGACACCCACAAAGATCAAATTTCTGAGTTCATTACCCGTACTAAGAAGAAGATGAGAACTACTTCAAGCATTCGATTTGGAAAGAACGAATCCTCGAGAAGGGGGTAA 1938 0.4634 MIPWGGVSCCLSAAALYLLGRSSGRDAEILKSVNRVNQLKELAQLLDAEILPLVVAISGRVGSETPVNCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTSHVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIQYILERRRRCELQKRVLAAAAKRSGQDNEGEKADSSPDGAKRDRIMPDLCVICLEHEYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTWWCNVFTSLGKLPCYSHPDDRSGSSAVCPRFPHNGGSKEPHEDNIRCYCGKWKMDELQKGESLPRKNNQIKDLILGFGSAWFPRNLTSTRNGCSSKLSPGSSPSCLKPFKVYMERNNHPNHSSMCRKIRQALANSSAGRTIHRISHHHQQEPSGTPLPPPRHIRGNYNGEGNGAIPINFVDHPNPTFNGQGQAGKVATRIEPERLHYASGRGEEKGKSTAREFGQQHEKKDMNYVFGEFIQRAREKLRTVSNIGKAHQSKPAQDEASQNVARKKDTHKDQISEFITRTKKKMRTTSSIRFGKNESSRRG 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0414 645 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Lele16g0414 645 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Lele16g0414 645 FunFam E3 ubiquitin-protein ligase SP1 280 338 - -
Lele16g0414 645 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lele16g0414 645 MobiDBLite consensus disorder prediction 603 626 - -
Lele16g0414 645 CDD RING-HC_LRSAM1 291 330 - -
Lele16g0414 645 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Lele16g0414 645 FunFam Baculoviral IAP repeat containing 7 301 337 - -
Lele16g0414 645 MobiDBLite consensus disorder prediction 588 645 - -
Lele16g0414 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Lele16g0414 645 SUPERFAMILY RING/U-box 285 336 - -
Lele16g0414 645 MobiDBLite consensus disorder prediction 588 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0414 Lele-ChrLele16 2239608 2245571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0414 1 272 C3H Transcription Factor Family AT1G63900 78.467 2.72e-153 441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1946 14 25763484 25766811 Lele16g0414 16 2239608 2245571 hybridization