Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0405 ATGAATATTGTTACCCGGCAACAATTCGAAGCCTCTGTTCCCGAGCGAGTTCTTCAAGATGTGCGGTCGAATTGCGGTCACTCGCTTGCGCATAAGTCCCCTTGCTCTCTTTGTGCTACAGGCTTGTCCAAGTTGTCGGCTTTGTTTAGGGGACCGTCGACTGGGAACGTCTCCAATTGTAGAGACTATTCATCAATTTATGCTGCTGCTTTCCTCAATCAGTATGGACCCACCGACCCTGGTACCGCTAAGTGCTTATTCTCCATGGATCTTGAATCTGCGAGCTCCAGTTACAGGACGGAACATATCGTTATTGCGCTTGCTTTAGTCGTTTGTGTGTTGGGTTTGTTATTCGTGATTGGTCGGTTCTGGCTTTGTAGGAGATTGAACAAGAATAATAAGATACTGAGAAAGTACAATATTAGCAGAACTGAGATAGGGTTCGATTCTGGGTTGAATTCCTCAATCAGGTTCACATTTGATGACATAAAGAAGGCAACTGGGAACTTCAGCCTGAACAACTTGATTGGGAGAGGAGGATATGGGAATGTGTACAAAGGAGTGTTGCCCGATGGCAGTGAAGTGGCATTGAAAAGATTCAAGAACTGTTCGGCTGCAGGGGATGCGAGTTTCACTCACGAAGTTGGGGTTATTGCAAGCGTGAGGCATGTCAACCTTGTAGCTCTGATAGGTTATTGCACTGCCACAACTAACTTAGAGGGTCACCAGAGGATTGTCGTCTGTGAATTGATGAAGAATGGGAGTCTTCACGATCATCTTGGGAGAAAAGCTCTTCACATGAACGATGATGGCCAACCCTTTTCTCTCGCTGATTGGGCTTGGTCATTGGTCAGAACAGGTCGAGCTTTGGATGTAATTGAAGATGGTATGCCAGAAACTGGTGAACCGCAGGTTATGGAGAAATATGTGTTGGTTGCTATAGTTTATGAATCAGTGCCAGCTATACCTGAGAGATCGATTCCTGTGGTTGCTAGGAGGATTGATATTGAGAGAAGTATCAGCAATTGTGGGTCGGGTAAACAACTTTTAAAAAGATTCCCAGAGCATCTCCATTCTTCAGCACGGTATCCAAAGGGTATATTCTGCTTTAAGTATGCTGGATCTGTGAAAATCCGAAGATACCAAGATTCCATCAAGGGATATCCATTACATTACGGTGATCATGTGAGGCTAATTCAGTTGGCAGAATCTCTCACAGCGAAGAACTCACAAGTGATACTGCCCGCCAAGTCGTGGCTTGCTCTGTCATGA 1272 0.452 MNIVTRQQFEASVPERVLQDVRSNCGHSLAHKSPCSLCATGLSKLSALFRGPSTGNVSNCRDYSSIYAAAFLNQYGPTDPGTAKCLFSMDLESASSSYRTEHIVIALALVVCVLGLLFVIGRFWLCRRLNKNNKILRKYNISRTEIGFDSGLNSSIRFTFDDIKKATGNFSLNNLIGRGGYGNVYKGVLPDGSEVALKRFKNCSAAGDASFTHEVGVIASVRHVNLVALIGYCTATTNLEGHQRIVVCELMKNGSLHDHLGRKALHMNDDGQPFSLADWAWSLVRTGRALDVIEDGMPETGEPQVMEKYVLVAIVYESVPAIPERSIPVVARRIDIERSISNCGSGKQLLKRFPEHLHSSARYPKGIFCFKYAGSVKIRRYQDSIKGYPLHYGDHVRLIQLAESLTAKNSQVILPAKSWLALS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0405 423 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 131 249 - -
Lele16g0405 423 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
Lele16g0405 423 Gene3D Phosphorylase Kinase; domain 1 131 249 - -
Lele16g0405 423 SUPERFAMILY Protein kinase-like (PK-like) 141 266 IPR011009 -
Lele16g0405 423 ProSiteProfiles Protein kinase domain profile. 170 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0405 423 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 261 - -
Lele16g0405 423 Pfam Protein tyrosine and serine/threonine kinase 172 268 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0405 Lele-ChrLele16 2201487 2205723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0405 262 338 Receptor kinase-like Gene Family AT2G48010 47.475 6.96e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lele16g0405 PK_Tyr_Ser-Thr 5.6e-13 CL0016