Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0403 ATGAATGAGAGGGTAGATTCTCCTGTTGGAGTTCTGGAGGACTATTTTGGAAGTCCAGAGTCAGAAACTAGCTGTTCCAATTCCAAAGAACCCACGGTGGGTTCAGGCTCTGAAAATGATAAGTCAAAAACTGCTTCTAGATGGCCTCGTTTCCTTCAACTGTTGATGACCAGATCAAAGAAACCTATAGCCCCGTTGCATCCTCTGAGTGCCCTCAGGCTCTCCAAGAGATTCAGCAGTGGTACAAGAGAGACTATACTGCCAAATCATCACATTGATGCAGATTCATCCCTCCACAGATCAACCTGCAAGATCTTTACCCACCATGACATTCAACTGGCAACCAATCATTTCAGCCAGAAGAATTTGATTGGAAAAGGAGGTTATGCTGAAGTTTACAAAGGGTGTATGCGAAATGGTCAGCTGGTAGCAATTAAACGGCTAACTCGAGGAACCCCAGATGAGATCATAGGGGACTTTTTATCAGAACTGGGCATAATGGCGCATGTGAACCATCCCAATACTTCTAAGTTGGTTGGCTATGGAGTGGAAGGAGGAATGCATCTTGTCCTGGAATTGTCTGTAAAGGGGAGCTTAACTTCGTTGCTTTATGGTTCGAAGGAGAAACTACCATGGTGTGCAAGGCACAAAATTGCGTTGGGAACGGCCAAAGGGATACTTTATCTTCACGAGGGCTGTCATAGGAGAATTATCCAGAGAGATATAAAGGCTGCAAATATCTTGCTTACGGAGGACTTTGAACCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCATCACACCGTTTCAAAATTCGAAGGGACTTTTGGCTACCTTGCTCCAGAATACCTGCTTCACGGCATAGTAGACGAGAAAACAGATGTATATGCCTTCGGTGTATTGCTTTTAGAATTGGTCACAGGGCGGCGAGCACTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAGACCATTGCTGAAAAAGAATGATATAAGGGAGTTGATTGACCCTTCACTAGACCAAGACTATGACTGTAGTCAGATTCATTTGGGGCTCTTGGTAGTTTCATTATGCATCCAACAATCCGCAATTCGTCGGCCCTCCATGAGACAGGCACGCTCTTCTGAATTTCAACACGGCTTATATATATGTGCTCTTCATTCAGTTGTGCAGCTTCTGAACGGCAACCTTAGCGGCTGTAAGCACATGAAGAAGACTCGGCTTTCATTTGTTAGTAAAGTCCTAGAGGAAGGGCTCCTCCATTCTGAGTAG 1293 0.447 MNERVDSPVGVLEDYFGSPESETSCSNSKEPTVGSGSENDKSKTASRWPRFLQLLMTRSKKPIAPLHPLSALRLSKRFSSGTRETILPNHHIDADSSLHRSTCKIFTHHDIQLATNHFSQKNLIGKGGYAEVYKGCMRNGQLVAIKRLTRGTPDEIIGDFLSELGIMAHVNHPNTSKLVGYGVEGGMHLVLELSVKGSLTSLLYGSKEKLPWCARHKIALGTAKGILYLHEGCHRRIIQRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVYAFGVLLLELVTGRRALDYSQQSLVLWARPLLKKNDIRELIDPSLDQDYDCSQIHLGLLVVSLCIQQSAIRRPSMRQARSSEFQHGLYICALHSVVQLLNGNLSGCKHMKKTRLSFVSKVLEEGLLHSE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0403 430 MobiDBLite consensus disorder prediction 1 45 - -
Lele16g0403 430 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Lele16g0403 430 ProSiteProfiles Protein kinase domain profile. 118 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0403 430 MobiDBLite consensus disorder prediction 19 42 - -
Lele16g0403 430 PANTHER OS08G0249100 PROTEIN 6 412 - -
Lele16g0403 430 SMART serkin_6 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0403 430 Pfam Protein kinase domain 119 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0403 430 Gene3D Phosphorylase Kinase; domain 1 89 192 - -
Lele16g0403 430 SUPERFAMILY Protein kinase-like (PK-like) 98 384 IPR011009 -
Lele16g0403 430 Gene3D Transferase(Phosphotransferase) domain 1 195 387 - -
Lele16g0403 430 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 88 192 - -
Lele16g0403 430 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 195 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0403 Lele-ChrLele16 2197045 2198895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0403 105 384 Trihelix Transcription Factor Family AT1G68690 40.206 1.02e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lele16g0403 Pkinase 3.1e-40 CL0016