Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0397 ATGGGCTCCAAGCCGTGGCTGTACCCGGCTCCGACTTATCGAACTCTAAATACTCACTGGGATACCGATGAAGATGCCCCCGGTCCCCGAACCGGCCACACCCTCACCGCCGTTGCCGCCACCAAGACGCACGGTCCTCGCCTTATCTTATTCGGGGGCGCCACCGCCATTGAAGGAGGCTCTTCCTCTACATCCGGCATTCGATTAGCGGGAGTCACAAATTCAGTTCATTCCTACGACGTTGCTACGAAAAAATGGACCAGAATAAGACCCGCAGGCGAGCCGCCCTCTCCTCGGGCTGCCCATGCTGCCGCTGCTGTTGGAACTATGGTTGTTTTCCAGGGCGGGATAGGTCCAGCTGGGCATTCAACCGATGATCTCTATGTGCTCGACATGACCAATGATAAATTCAAGTGGCACAGAGTCGTTGTGCAAGGACAAGGACCTGGGCCTCGCTATGGACATGTGATGGACTTGGTTGCTCAAAGATTTCTTGTCACTGTCAGCGGGAATGATGGGAAAAGAGTTCTGTCTGATGCCTGGGCTTTGGATACTGCTCAAAAACCTTACATGTGGCAGAAGTTGAACCCAGAAGGTGACAGACCTTCTGCTAGAATGTATGCGACTGCTAGTGCCCGCTCAGATGGTATGTTTCTGCTGTGTGGTGGAAGAGACTCTTCTGGAGCAGCACTAGGAGATGCCTATGGACTGCTCATGCATAGGAATGGTCAGTGGGAATGGACTCTTGCACCTGGAGTTTCTCCTTCCCTAAGGTATCAACATGCTGCGGTTTTTGTAGGTGCAAGATTGCATGTTACAGGAGGTGTTCTTAAGGGTGGACGTGCAGTGGAAGGTGAAGCCGCCATTGCTGTATTGGACACTGCTGCTGGGGTTTGGCTGGACAGAAATGGCCTTGTGACCACCACCTCACGCACAAGCAAAGGTTATGATTATGACCCTTCTTTGGATCTTATGCGTCGTTGTCGTCATGCAGCAGCTGCTGTTGATGCTCGCATATATATTTATGGCGGTCTTAGAGGAGATACTCTGCTAGATGATTTCCTAGTGGCTGAAAATTCACAACATCAGTCTGAAATTAACTCTCCTGTTTTAACGGCTGAGAGAGCTTCACCTATTGCAAGCCCCAACAGGAACCAATCTAACTTAAATTATGACGTGAAAACACCAGGTTTGGGTGATGGGTCAGACATTCACTCATCCGGTGGCATGGGCACCATGGACAAAAACTCCATGGAGAAACTGAGGGAAGCATCTGCTGCTGAGGCTGAGGTAGCAAGTGCCGTCTGGCAAGCTGTGCAATCTGTATCAAGCAGTCAAGCTGAAGAAACATCTGTGTCAGATGACAACTCACAAGCTGCAGAAACAGCTTCAGATGGCAGTGATGTAGAGGGGGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCTAAAGAGGCCGTGGGTAACCTGGGTGGAATGGTGAGACAGTTATCACTGGATCAATTTGAAAATGAGAGCAGAAGGATGATTCCCATAAATAATGATATGCCATATTCTGCAAAAAAGTTCACCAGGCAGAAATCCCCTCAGGGCTTACATAAAAAGATAATTTCAACTCTGCTCAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCAGTTCTTCTTGGATTCTTATGAAGTGGGTGAGCTGTGTTATGCTGCTGAACAGATATTCATGCATGAACCAACTGTTCTACAGCTGAAAGCTCCTGTCAAAGTATTCGGTGATCTTCATGGGCAGTTTGGTGATTTGATGCGGCTGTTTGATGAATATGGATTTCCTTCAACTGCTGGGGACATAACGTATATCGACTACCTGTTTTTGGGGGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATCACCTTGCTTCTTGCTCTTAAGATTGAATATCCTGAGAATGTTCACTTGATACGTGGAAACCATGAAGCAGCTGACATAAATGCTCTATTTGGTTTTCGCATTGAGTGCATTGAGAGAATGGGAGAAAATGATGGAATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTCCCTCTTGCCGCCCTCATTGAAAAGAAAATTATCTGTATGCATGGTGGTATAGGAAGGTCTATCAATTCAGTAGAACAGATAGAAAAGCTTGAAAGGCCCATAACGATGGATGCAGGATCTATTATTTTAATGGACCTTTTATGGTCTGATCCCACTGAGAATGATAGCATAGAGGGTTTGAGACCAAATGCTAGAGGGCCAGGGCTTGTCACATTTGGGCCTGATCGTGTCACTGAATTCTGCAAGAAAAATAAATTACAGCTCATTATACGAGCTCACGAGTGTGTCATGGATGGTTTTGAGCGATTTGCCCAGGGACAGTTAATAACTCTTTTTTCTGCAACTAATTATTGTGGGACGGCTAACAATGCTGGAGCCATACTGGTAGTTGGAAGGGGCTTGGTTGTGGTTCCTAAATTAATTCATCCCTTGCCCCCTCCCCTTCAGTCTCCTGAAACATCTCCTGAGCGTATCATGGAGGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCCCCAACCCCTACTCGGGGTCGACCCCAGCCAGACCATGATCGCAGTTCACTGGCATACATATGA 2664 0.4756 MGSKPWLYPAPTYRTLNTHWDTDEDAPGPRTGHTLTAVAATKTHGPRLILFGGATAIEGGSSSTSGIRLAGVTNSVHSYDVATKKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDMTNDKFKWHRVVVQGQGPGPRYGHVMDLVAQRFLVTVSGNDGKRVLSDAWALDTAQKPYMWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAALGDAYGLLMHRNGQWEWTLAPGVSPSLRYQHAAVFVGARLHVTGGVLKGGRAVEGEAAIAVLDTAAGVWLDRNGLVTTTSRTSKGYDYDPSLDLMRRCRHAAAAVDARIYIYGGLRGDTLLDDFLVAENSQHQSEINSPVLTAERASPIASPNRNQSNLNYDVKTPGLGDGSDIHSSGGMGTMDKNSMEKLREASAAEAEVASAVWQAVQSVSSSQAEETSVSDDNSQAAETASDGSDVEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDMPYSAKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRQFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSINSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERIMEETWMQELNIQRPPTPTRGRPQPDHDRSSLAYI 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0397 887 Gene3D - 6 195 IPR015915 GO:0005515
Lele16g0397 887 Gene3D - 513 860 IPR029052 -
Lele16g0397 887 Gene3D - 196 366 IPR015915 GO:0005515
Lele16g0397 887 FunFam Serine/threonine-protein phosphatase 9 192 - -
Lele16g0397 887 Pfam Serine-threonine protein phosphatase N-terminal domain 535 582 IPR031675 -
Lele16g0397 887 Pfam Galactose oxidase, central domain 45 106 - -
Lele16g0397 887 Pfam Calcineurin-like phosphoesterase 584 791 IPR004843 GO:0016787
Lele16g0397 887 MobiDBLite consensus disorder prediction 378 393 - -
Lele16g0397 887 MobiDBLite consensus disorder prediction 863 887 - -
Lele16g0397 887 CDD MPP_Bsu1_C 536 838 IPR041758 -
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 652 676 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 690 716 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 802 818 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 780 800 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 720 747 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 584 611 IPR006186 GO:0016787
Lele16g0397 887 PRINTS Serine/threonine phosphatase family signature 619 646 IPR006186 GO:0016787
Lele16g0397 887 MobiDBLite consensus disorder prediction 445 472 - -
Lele16g0397 887 SUPERFAMILY Metallo-dependent phosphatases 537 848 IPR029052 -
Lele16g0397 887 SMART pp2a_7 556 842 IPR006186 GO:0016787
Lele16g0397 887 FunFam Serine/threonine-protein phosphatase 521 860 - -
Lele16g0397 887 PIRSF STPPP_BSU1 1 887 IPR012391 GO:0004721|GO:0009742
Lele16g0397 887 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 887 - -
Lele16g0397 887 SUPERFAMILY Kelch motif 67 359 IPR015915 GO:0005515
Lele16g0397 887 MobiDBLite consensus disorder prediction 445 464 - -
Lele16g0397 887 ProSitePatterns Serine/threonine specific protein phosphatases signature. 653 658 IPR006186 GO:0016787
Lele16g0397 887 MobiDBLite consensus disorder prediction 366 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0397 Lele-ChrLele16 2162899 2168566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0397 585 783 Calmodulin-binding Proteins AT5G63870 32.609 1.29e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2027 13 27518228 27524210 Lele16g0397 16 2162899 2168566 hybridization
Lele14g1962 14 25862278 25867881 Lele16g0397 16 2162899 2168566 hybridization