Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0390 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGATTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCGGGGGATCATGTGATGGTTGCCGATGGTTTGAGGCAGAGTTGCTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATCGAGGCCTCTGAAGATACGTGGCCTGCCCGAAAACATGTGGTTGCTTGTGCTGGCGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCCGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATCAAACGGAATCGCAGTAATCAAACATATTATCTGTACCTCAGTTTAAACCAAGCTTCAGTCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGGAGTAGCTCTTACATTGGAAAACTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTACGATGCACACCCTCCAATTTGTGGTGCCAAAGTGACTAAATCTTGTTCAACTAGACCAGTTAGTCTCAAGCAAGTGTCTCCAAGAATTCCTGCTGGCAACTATCCCATTGCACATGTCTCATATGATCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGGTGTGGCCCCCACACAAACTCAATTCCTGCATAGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGATCAAAATCAACTCGCTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTGCAAAACAAGTCCCCGAGGTGGCATGAGCAGCTCCAATGCTCAGGAAACTGTTATTCTTCAGTTTGGAAAAGTGGGGAAAGATTTGTTCACGATGGATTATCAGTATCCAATCTCCGCTTTTGA 1080 0.4565 MSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLSLNQASVDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSSYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSCSTRPVSLKQVSPRIPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCSGNCYSSVWKSGERFVHDGLSVSNLRF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0390 359 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Lele16g0390 359 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele16g0390 359 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lele16g0390 359 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele16g0390 359 Pfam F-box domain 55 101 IPR001810 GO:0005515
Lele16g0390 359 PANTHER TUBBY-RELATED 36 332 - -
Lele16g0390 359 Gene3D Tubby Protein; Chain A 115 335 IPR025659 -
Lele16g0390 359 Pfam Tub family 116 332 IPR000007 -
Lele16g0390 359 SUPERFAMILY F-box domain 47 99 IPR036047 GO:0005515
Lele16g0390 359 SUPERFAMILY Tubby C-terminal domain-like 104 332 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0390 Lele-ChrLele16 2136703 2139518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0390 1 332 TUB Transcription Factor Family AT2G47900 73.433 1.06e-173 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele16g0390 Tub 3.6e-62 CL0395