Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0372 ATGAGTGATAACTCAGAGAGAGAAGGCTTTGAGAAGTACAACTTCAACAACACAGGTTCTCATCATCATCATCAAGATGGGGGAATCCTCAAGGAGCAAGATCGTTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCAAAAATCTCCAAAGAAGCTAAAGAATCCATGCAGGAATGTGTTTCTGAGTTCATAAGCTTCGTCACTGGGGAGGCTTCCGATAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGCGACGACATTTGCTGGGCCCTCGCCACTCTAGGGTTTGACGACTACGCCGAGCCACTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAAGGTGAGAGATCTAACCAAAATAAGGATAACAATATTCATACCGATGAAATTCATATGTCTGATAAAGCATATGATTATGGAGGTGAGCCTCCAGCTAGGAGAGCCCCCACTACGAGTGCTTCCTCTGGTTCTGGTACCTCATTGATGAGGTTCAATGGCTCCTCTCATCACTCGCACCAGTTTTCAAACTTCTAG 564 0.4504 MSDNSEREGFEKYNFNNTGSHHHHQDGGILKEQDRLLPIANVGRIMKQILPPNAKISKEAKESMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNKDNNIHTDEIHMSDKAYDYGGEPPARRAPTTSASSGSGTSLMRFNGSSHHSHQFSNF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0372 187 MobiDBLite consensus disorder prediction 145 187 - -
Lele16g0372 187 MobiDBLite consensus disorder prediction 158 187 - -
Lele16g0372 187 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Lele16g0372 187 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Lele16g0372 187 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Lele16g0372 187 FunFam Nuclear transcription factor Y subunit B-3 25 148 - -
Lele16g0372 187 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele16g0372 187 MobiDBLite consensus disorder prediction 1 27 - -
Lele16g0372 187 SUPERFAMILY Histone-fold 33 147 IPR009072 GO:0046982
Lele16g0372 187 Gene3D Histone, subunit A 28 148 IPR009072 GO:0046982
Lele16g0372 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Lele16g0372 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0372 Lele-ChrLele16 2038954 2039517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0372 10 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.917 9.96e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele16g0372 CBFD_NFYB_HMF 3.4e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0372 16 2038954 2039517 Lele05g1557 05 9972488 9974432 CCT
Lele16g0372 16 2038954 2039517 Lele06g1403 06 9030073 9032016 CCT
Lele16g0372 16 2038954 2039517 Lele07g1613 07 9975712 9979010 CCT
Lele16g0372 16 2038954 2039517 Lele08g1402 08 8976671 8978607 CCT
Lele13g2052 13 27655437 27656000 Lele16g0372 16 2038954 2039517 hybridization
Lele14g1983 14 25986876 25992603 Lele16g0372 16 2038954 2039517 hybridization