Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g0337 | ATGCTCAGCGTTGTTTTAACCAACCGTGAAACCTGCTTGGGCGGCCTTCAAGACACTGACGCTTCTTCTCATCCGAGCGTCGTGAGAGGGCTGTCTTTCTCGGTTTTTGATGACAAGAAGCTCTATGGAGTCTCTTTGTCCCTTTTCACGGAGGGTTGGGTCCACGAGAGTAAACAGAAACCGGAATTACCGTGGCCCCGACCTCCCCAAATGCAAGCTGTATTCCTAAATGGTCATTTGCTTCTTGCGATGTCGAACAGAACACGTGCTATCTTCAGGGCTGCTAGTGGTAGAAAATTAGACATTGGTTTTGCGGCTCCCTACGTGGCATTAGTGAATGGCATCGTCACGGTGAGTAAAGACGGGAGAGGTAACTTCACCACCGTCAACAGTGCCCTTGCTGCAGCTCCCAACAGAAGTTCCTCTTCGAAAGGCTACTTCTTGATCTGTGTCTCAGCTGGAGTTTACGAAGAATATGTCTACGATAAGGAGAAAACCTACTTGATGATGATCGGAGATGGTATCAACAGGACTATCATCACGGGCAATCGCAGCCAATGA | 561 | 0.4884 | MLSVVLTNRETCLGGLQDTDASSHPSVVRGLSFSVFDDKKLYGVSLSLFTEGWVHESKQKPELPWPRPPQMQAVFLNGHLLLAMSNRTRAIFRAASGRKLDIGFAAPYVALVNGIVTVSKDGRGNFTTVNSALAAAPNRSSSSKGYFLICVSAGVYEEYVYDKEKTYLMMIGDGINRTIITGNRSQ | 186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g0337 | 186 | Gene3D | - | 111 | 186 | IPR012334 | - | |
| Lele16g0337 | 186 | SUPERFAMILY | Pectin lyase-like | 111 | 185 | IPR011050 | - | |
| Lele16g0337 | 186 | PANTHER | PECTINESTERASE | 1 | 185 | - | - | |
| Lele16g0337 | 186 | Pfam | Pectinesterase | 116 | 185 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g0337 | Lele-ChrLele16 | 1884169 | 1884729 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele16g0337 | 1 | 185 | Carbohydrate Esterase | AT1G02810 | 44.724 | 3.21e-48 | 163 |