Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0335 ATGTCCACCATGCACCACCTCAAGAGAACAACACTCTTACTGGCCCTTCTTCTTCTACTCTTGTTCCTCGTCAAAGCAACAGAACAACAAGAATTAACGCACCTACATTCTCAGAAACATCTTCAAGTAGCTCATTCCACTTGCCAAGGAACACTGTATCCTGACCTTTGTGTTTCCACGCTCGCTTCCTTCCCGGATCTTACCTCTAAATCTGTTCCCCAAGTCATCTGCTCCCTCATCGACCACACCATGGACGAGGTCAGATCCTCATCCTCTAACTGTACTGGTCTCCGAAGAAAGCTCAGAAACCTAAACCCGCTTCAACTGAGAGCTCTCGATGACTGCCTCCAGCTGTTTGATTACACTGACGAGGAGTTCAAAACCAGCTTGGCAGATCTCTCCCACTCACAGATTGATTCCAGGCGCTACCACGACTCGCTAACTCTACTGAGCGGCGCAATGACCAATGTTTACACGTGCCTCGACGGCTTTGCCGACGGAGACACCAATGGACTTGTGAGACGCATTATCCAGGATGACTTGTATCTGATTTGCCACCACGTAAGTAACTCATTGGCTATGTTCAAGAAAATAAAGGGGGTGAAGAAACAGTCCCCATCCGAGACATTCCCAACCAAAATGAAGCATGGCTTCCCATCTTGGCTTACCTCCAAAGACAGAAAGCTTCTTCAAGCTGCCGTTAATGAAACCAAGTTCGATCTAATGGTGGCCAAAGATGGCTCCGGCAACTTCACCACCATTGGGGAAGCAGTAGCTGCGGCCCCCAACTCCACCAAAACCAGGTTTGTGATACTCATAAAAGCTGGGGCGTACTTCGAGAACGTGGAGGTGATCAGGAAGAAGACCAATCTGATGTTCGTTGGGGATGGGATTGGGAAGACGATAGTGAAAGCCAGTAGAAACGTGGTGGATGGGTGGACCACCTTTCAATCCGCTACTGTAGCGGTGGTAGGAGACGGATTCATAGCGAAAGGGATCACCATTGAGAACTCGGCGGGGCCCAGCAAGCACCAGGCGGTGGCCCTCAGGAACGGCGCCGACCTCTCCGCCTTCTACCAATGCAGCTTCGTCGGCTACCAAGACACCCTCTACGCCCATTCCCTCCGTCAGTTCTACCGCCAATGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTGCTCCAAAACTGTAACCTGTACGCTCGCAAGCCCAACGACAAGCAGAAGAACCTGTTCACGGCTCAAGGCAGAGAGGACCCCAACCAGAACACGGGCATTTCCATAATCAACTCCAAGGTGGCCGCCGCATCCGACTTAATCCCGGTGAAGTCATCGTTCCCCTCGTACCTGGGGAGGCCTTGGAAACAGTACTCGAGGACGGTTTATGTGGGATGTTTCATGGAGGATTTGATTGATCCGGCAGGATGGTTGGAATGGAACGGGTCCTTTGCATTGGATACGTTGTATTATGGTGAGTACAAGAACAGGGGTCCTGGTTCCAACACGAGTGGGAGAGTGAATTGGAAAGGTTACAGGGTCATCAATTCCTCCACAGAGGCTTCTCAGTTCACCGTTGCCCAATTCATTCAGGGCTCTGACTGGTTGAACTCCACCGGCGTTCCTTTCTTCCCTGGTCTCAGCCCCTGA 1662 0.5174 MSTMHHLKRTTLLLALLLLLLFLVKATEQQELTHLHSQKHLQVAHSTCQGTLYPDLCVSTLASFPDLTSKSVPQVICSLIDHTMDEVRSSSSNCTGLRRKLRNLNPLQLRALDDCLQLFDYTDEEFKTSLADLSHSQIDSRRYHDSLTLLSGAMTNVYTCLDGFADGDTNGLVRRIIQDDLYLICHHVSNSLAMFKKIKGVKKQSPSETFPTKMKHGFPSWLTSKDRKLLQAAVNETKFDLMVAKDGSGNFTTIGEAVAAAPNSTKTRFVILIKAGAYFENVEVIRKKTNLMFVGDGIGKTIVKASRNVVDGWTTFQSATVAVVGDGFIAKGITIENSAGPSKHQAVALRNGADLSAFYQCSFVGYQDTLYAHSLRQFYRQCDIYGTVDFIFGNAAAVLQNCNLYARKPNDKQKNLFTAQGREDPNQNTGISIINSKVAAASDLIPVKSSFPSYLGRPWKQYSRTVYVGCFMEDLIDPAGWLEWNGSFALDTLYYGEYKNRGPGSNTSGRVNWKGYRVINSSTEASQFTVAQFIQGSDWLNSTGVPFFPGLSP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0335 553 Pfam Pectinesterase 240 536 IPR000070 GO:0030599|GO:0042545
Lele16g0335 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Lele16g0335 553 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Lele16g0335 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 172 IPR006501 GO:0004857
Lele16g0335 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 198 IPR035513 -
Lele16g0335 553 SMART PMEI_2 39 194 IPR006501 GO:0004857
Lele16g0335 553 FunFam Pectinesterase 234 551 - -
Lele16g0335 553 PANTHER PECTINESTERASE 20 541 - -
Lele16g0335 553 CDD PMEI-like_3 46 198 - -
Lele16g0335 553 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Lele16g0335 553 Gene3D - 234 551 IPR012334 -
Lele16g0335 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0335 Lele-ChrLele16 1873263 1875602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0335 68 547 Carbohydrate Esterase AT4G02320 53.441 0.0 536