Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0331 ATGCCTAGGGAAGCGTCGTCAGATTGTCGGGGTTTGTGGGGACGAGCCTTGGACTTATTTCTGTTGGCGACAAAAGATGCGACGGCTACGAGACCGGTGACGGCTAAGGCTCCACCAAAGACGAGAAGTCCCGGAAGAGCACCACGCACTATGCCGGCGCCGGAGGTCTTGTTGCGCTGCTCCTTGTTGTTGTCGGTAATACCTTGGCTTTTGGGCGCCTCCATCTCTAATTTGGCTTTTGAAGGTTCTTTATCACTCCTGGATTGTTGGGCGCAGATAGAAGAGGTTAAACTGCAACGATGCGCATTGGCTTTTTCACAACTTTCAAGTCTCAACTCCGTCCTCCATCTCTCCGAAGCTGGATCAAGCATGTGTGGGGGTGCTATCATCGCTGACTTCATTCCTCGCCACCGTGGTCGCCGCCTTACCCCCTCCGACATCTGGCCTGACACACTCGGAAACCACAATGACTTCCACTCAGAGTTTTCTCACCCCGTTCCCCTCCAAAACCCTCAACTTCCCACAGTAGCTGATCAGGTTGAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTGTACAGAGGGATTCGGCAGCGTCCGTGGGGTAAATGGGCTGCGGAGATTCGCGATCCGAGGAAAGGGGTTCGTGTTTGGCTCGGCACTTACAACACTGCGGAGGAAGCTGCCAGGGCCTATGACAGAGAAGCTCGTAAAATCCGCGGCAAGAAAGCCAAGGTCAATTTTCCCAACGAAGGCGAGGATTTCTCCATTCAAGCTCGCCGCAACCCACCACCTCCACCTCAACGCTCCAACGGTGCCCCGAGAAGTCTGAACCTGGAGTTCGGTTACGATCTGAACCAAGCCGGGGCAGTTTGTTCTTCCCGGGGGGCAGTGTCAGGGTCAGAGGGTGGGCACTCGACGATGGAGTTGTTGGAGTCGAATCAGAGAATGGGGAGCGAGGGAGGGAAGACGAAGAAGGTGGGCACAGAAGGGCAGGAAGAAGAAAACCAAGTAGGGGAGCTGTCGGAGGAGCTGATGGCGTACGAGAATTACATGAAGTTTTATCAGATTCCATACTACGACGGCCAATCGGCTACACGGAATAGCGTTCAGGAGAATGTGGTGGGTGACCTGTGGAGCATCGACGATGAAGGCATTCCGGCATGCGCGACGTCGTCCGCCATGTGA 1185 0.5511 MPREASSDCRGLWGRALDLFLLATKDATATRPVTAKAPPKTRSPGRAPRTMPAPEVLLRCSLLLSVIPWLLGASISNLAFEGSLSLLDCWAQIEEVKLQRCALAFSQLSSLNSVLHLSEAGSSMCGGAIIADFIPRHRGRRLTPSDIWPDTLGNHNDFHSEFSHPVPLQNPQLPTVADQVEKPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYNTAEEAARAYDREARKIRGKKAKVNFPNEGEDFSIQARRNPPPPPQRSNGAPRSLNLEFGYDLNQAGAVCSSRGAVSGSEGGHSTMELLESNQRMGSEGGKTKKVGTEGQEEENQVGELSEELMAYENYMKFYQIPYYDGQSATRNSVQENVVGDLWSIDDEGIPACATSSAM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0331 394 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 CDD AP2 192 249 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 Pfam AP2 domain 192 240 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 Gene3D AP2/ERF domain 191 249 IPR036955 GO:0003700|GO:0006355
Lele16g0331 394 SUPERFAMILY DNA-binding domain 191 249 IPR016177 GO:0003677
Lele16g0331 394 PANTHER DNA-BINDING DOMAIN 171 316 IPR044808 GO:0003700|GO:0009873
Lele16g0331 394 FunFam Ethylene-responsive transcription factor 2 190 249 - -
Lele16g0331 394 SMART rav1_2 191 254 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 MobiDBLite consensus disorder prediction 31 50 - -
Lele16g0331 394 MobiDBLite consensus disorder prediction 246 276 - -
Lele16g0331 394 ProSiteProfiles AP2/ERF domain profile. 191 248 IPR001471 GO:0003700|GO:0006355
Lele16g0331 394 MobiDBLite consensus disorder prediction 315 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0331 Lele-ChrLele16 1853596 1857372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0331 124 249 AP2-EREBP Transcription Factor Family AT3G16770 55.882 4.40e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g0331 AP2 1.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2017 14 26187906 26188813 Lele16g0331 16 1853596 1857372 hybridization