Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0316 ATGGGAAGAGCACCGTGCTGTGAGAAAGTAGGCCTGAAAAGGGGAAGATGGAGTGCTCAAGAGGATGAAATCTTGACTAGGTACATTCAGGCCAACGGGGAAGGTTCTTGGAGGGCTTTGCCCAAGAATGCTGGGCTGCTGAGGTGTGGCAAGAGCTGCAGGTTAAGATGGATCAACTACTTGAGATCTGACCTTAAGAGGGGCAACATTTCTGCTCACGAGGAACAGCTCATTATTAAACTCCATTCTTCTTTGGGCAACAGGTGGTCCCAGATAGCGAGCCACTTCCCAGGAAGAACTGACAACGAAATTAAAAACTACTGGAATTCTCACTTGAGCAGGAAGATCTCCGCCTTCAGGAGGCCGGCTAGTAGGGATCAGGCCGAGCAAGCAGTGACCACGGATCCGAGCGCACCCAATAATGCAAACATTAATATTACTGCAACCAAGCGCAAGCGTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAACAACACCCACCAAGAGTCTACGGCGGCGGAGAAAACGAATCACAACAGTACCGTAGCAGCAGTTCCGGTGCCACCCACGCCGGCACTAGAGAACGAAGGCTTGTCCATTACAAGTGACGATGACATAGACTTTGAGGATTTCATGGTTCTGGAAGGTGACGACATTGATACAGAAGAAGCGGGTGAGGCAAGTAACAACGATGGAGAAAGCTGCGAAGATGGTTCGTTGAGGTCAGGTGGAGACAGAGAAACAGAGACGACACAGGAGGGTCAAGCACAAGGCAATATTGATGGTGGTGGTGGGGAGCTATGTCTGAGTGACATGGTGGACACTTGGTTGCTGGAAGACGAAGGAGGTAGGGTTTCCAGTTTAACTGGAGAGAGAGAAAGATTCTATGAGGTGTCGTGTTTTGATCGGCCAGAGTGTACTAATAGTAATGCTCAAGCCACCATGCCCTCCCTATCTGAATGCGATAATTACTGGGATAATTGGGAGATTGGAGTGGAAGACCAGCTGATGAATAATCATAACGAGTCGCAGACATGGTGGGAGGACAAACAAAGCCTCTTGACTTGGCTCTGGGAAGACGATGATGATTGTCAGATTACTCAACAGAATGATCCTGATAAACAAAACCCGAACCTGCGTTTGATTCTTTAA 1161 0.4892 MGRAPCCEKVGLKRGRWSAQEDEILTRYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISAHEEQLIIKLHSSLGNRWSQIASHFPGRTDNEIKNYWNSHLSRKISAFRRPASRDQAEQAVTTDPSAPNNANINITATKRKRGRTSRWAMKKNRSNNTHQESTAAEKTNHNSTVAAVPVPPTPALENEGLSITSDDDIDFEDFMVLEGDDIDTEEAGEASNNDGESCEDGSLRSGGDRETETTQEGQAQGNIDGGGGELCLSDMVDTWLLEDEGGRVSSLTGERERFYEVSCFDRPECTNSNAQATMPSLSECDNYWDNWEIGVEDQLMNNHNESQTWWEDKQSLLTWLWEDDDDCQITQQNDPDKQNPNLRLIL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0316 386 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Lele16g0316 386 MobiDBLite consensus disorder prediction 122 208 - -
Lele16g0316 386 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele16g0316 386 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele16g0316 386 MobiDBLite consensus disorder prediction 161 187 - -
Lele16g0316 386 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele16g0316 386 Gene3D - 70 138 - -
Lele16g0316 386 MobiDBLite consensus disorder prediction 127 150 - -
Lele16g0316 386 Gene3D - 14 66 - -
Lele16g0316 386 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele16g0316 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele16g0316 386 CDD SANT 71 112 IPR001005 -
Lele16g0316 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele16g0316 386 FunFam Myb transcription factor 11 67 - -
Lele16g0316 386 CDD SANT 16 61 IPR001005 -
Lele16g0316 386 MobiDBLite consensus disorder prediction 225 268 - -
Lele16g0316 386 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele16g0316 386 SMART sant 13 63 IPR001005 -
Lele16g0316 386 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0316 Lele-ChrLele16 1772729 1774824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0316 1 162 MYB Transcription Factor Family AT2G47460 70.122 9.08e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g0316 Myb_DNA-binding 1.8e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2106 13 27936143 27938247 Lele16g0316 16 1772729 1774824 hybridization
Lele14g2032 14 26275322 26277253 Lele16g0316 16 1772729 1774824 hybridization