Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0312 ATGTTGCAAACAAGTTTCCCATCGCAAGTGTTTCTCAATGTTCGTTTTGTTCTCTATGGTTTAGATCCTACCAACGAAAGCAAGGTCCGATTCAAGCTTGTAAACGGCGGTGGAGTTGATGTTGGTCAGTACGGTCCAAGTTGCACACATGTCGTCGTGGGCAAACTTACATATGACGATCCTATTTGCGTTGCTGCAAGAAATGATGGGAAGACGCTCGTCACTGCTTTATGGGTTGATCATAGTGTTGATATTGGAATGCCAGTTGATCCAAACTCCGTCATGTACAGACCCCTGAAAGATTTAAATGGTATACCGGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCAAGCAAAATTACTCATCTTGTATGCTACAAATTTGAAGGAGAAAAGTACGAGCTTGCCAGTAGACTGCAGACAATTAAGTTAGTTAATCATCGGTGGTTGGAAGACTGTTTGAAGGATTGGACGCTTCTCCCTGAAGAAAAATATAAGAAGAGTGGTTATGAACTAGAGACGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAGCTGAAGATCTCATGCCAGGGAAATCTGGGGGAAGAAATATAACTAAGAGTCCCTTTAGTTCAAAAATTGATACTGCCACTACCCATAACTCATCAAGACCTGTAATAGTAGAATCAAATGCCTTTCCTGGTTCTGCTGCTCCTGAGGGATTGCGGCAAGCAAATGAGGGGCATGAGTCCTTATTAATTCTAAAAAATGAGAATAGATCTGATCAAACCAGAAGCATCCATCATGATGATCTAAAATCAAGTTCTGGGGATCCTGGCGTTTCTAGGCATGATGCATCTGGTCAGCTTCCCAACACATGTGCCAAGACTACTAAACCTAAAAACACTTGTGTTCCAGAAGCGGTTGACTGCCAGAATCTTGGCATTCCTGGAAATGTCGATTCATCAGGTCATCTTCCTGATCTTCAGGCTGGTACTTCGGAGTATGGGATGTTGGTTAATGACTTGAGATTGACTTCTGAAAGTGTTGAAGGACATGTACACTCAGATGCAAAGGGTAGTGCTGCAAGTAACTCTAGGAAAAACTTGAGATTTTCTCCTCCAAGTGGCTTAAATGAAAACCTTGGCAATTTAAGTGATCCTTCTGCAGCACCCTTAAATAATTTGAAATTAAGAAACGACCTAGAAGCCTCTTCGAGCAAGGTGGAAAAGGCAAGTGACAGCATCAACTTCGCTTTTGTTGAAGGTTATGGAAAGGGAAATGATTTTAGTAACAAGAAAGGGCCAAGTAGTTTGTTACCTAAAAAGAGGACGATTGAAGCTCCTACTAAATTTAAATCAAAGACGACGACAGACGCAAAACTTTCCATTGAAAGATCTCCATTGGCGGATAGCAATAAGCTACCAGAGATAGAACACCATTTTCCAGTGGGAAGAGATGATATAAAGGACCCAGAAACTTTGAGCTCAAAGTCTCTGCAAGATGATGATGCACCCAAAATTAATGGCAAGCCTGATATTGCAGGTTTTGGCAGGGAAGAAGTTGCTCAAGATGGCGATGAAACAGAACCTCATAATGGCAGGAGCGATCTTGAATGCTCATATTCCAGTAAAAAGAAGTCTAGAAATGATGAATCAACTGGTCGTGCTACCCTGGATTTATGCAACAAAGTAAGTGACAAGTTGATTAGAAAATCACCCCACAAGAAGACAGTTGCCAAGAAATGTTTGGGTTCTAGACCTAAATCAGGTGGTGCTAATGTTAAAAAGAAGGGTTTGATTTCATTAAATGAAAGTACCCCTCAAGCTGATGGTGCAGGTGGTTTAAGTGGAGGTAAAGAGACGGCAGTTTGTGATGGGAAGAAGCTTCATAAATCCTCTAAAATTGTTAGTGTTGAAACGTCAATGGAGCAGGATAGTGTCTGTAAATCTGGAGAAAATGCCAATGGCAGAGAATTTCAGGATGAAGAAACAGATGCTCTGGTTGACAAATCTGAGTACAAGGGACTGGCAGTTGATGAAGACAATTGTGAATCAGTTAATCTTTTGAGAAAATCTGTTGCACAGACAGAAGAGAAGTTGGAAGCAACTCACCATGCATCAAAATCTAAATCAAAGCCTCCAAAGGAAGGTACAGATGGAACTACACCAGTGGTACTTGAGCCGGTAGACTCAACCTCTAAAGTAAAAGGAAAGCCTAAAGGGAGAAAACTTACTGAAGGTAGAACCAAGAAAGCCACATTTACCAAGGATATAAAGAGGCCTGAGAAGGCTGCATCCAGTGAGAGGAGAGATGAGACAAATATGGAAAGCATGGAAACAGTTTTATTTCCTGCTGGTAAAAATAGCAGCTCAGCTGTACTGACAAATAATGCAGGGAGTTTTCAGGAAGTTGAGAAGGAAAACAGACCAATTGATGGGGAGGGCATTGGGGATGGTATAAACATTGAAAATTCAGTTCTTAAAAATAGTGCAGGTCAAGCAAAGATCAATCAGAAGACTCGGAAAAAAGCTCTTAATTCATCCATATCAGAACATGACAAAATATTGAAAAGAGAACCTGCATGTTTTATAGTGAGTGGGCATCGCTTACAGAGAAAGGAGTTTCAACAAATGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCGGATCCTATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGGAGGTGGATTCTTAAAACTGATTACATAACTGCATGTAGTCAGGCCGGTAAATTCTTGGCAGAAGAACCTTATGAGTGGCACAAGAGTGGCCTTAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGCGGCTTTTGAAAGAGAAGACAGGTCATGGTGTCTTATACGGAATGCGCATTATTGTATATGGCGATTACATTGTCCCACCTTTGGATACCCTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCTCCTCCTTACAACCGGTTCCTTGATACCGGTGTTGACTATGCCATAGTTAGCCCGGGCATGCCACGTGTTGACACGTGGGTCCAAGAATTCTTAAAACACGAGATACCGTGTGTTTTAGCTGACTACTTGGTGGAGTATGTGTGCAAGCCGGGGTTTTCCCTCGAGAAGCATGTACAGTATGGGACTCATGCTTGGGCAGAGAGGTCATTTGCTAAGCTTCAAAGGAAGGCGGAAGAGATCATCAAGAATCCTCCAGAAGCTAATGATGATAATGACACAGCTTGCCATGTATGTGGATCCCGAGATAGAGGAGACGTAATGCTGATTTGTGGTGATGAAAGGGGTTCCGTTGGTTGTGGAGTTGGTATCCATATCGATTGCTGCGATCCTCCTCTAAAGGAGGTTCCTGAAGAGGATTGGTTTTGTCCCAGGTGCAGTGAAACCCGAAACTGCTCCAACTCTAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCCAAGAGCAAATGA 3603 0.426 MLQTSFPSQVFLNVRFVLYGLDPTNESKVRFKLVNGGGVDVGQYGPSCTHVVVGKLTYDDPICVAARNDGKTLVTALWVDHSVDIGMPVDPNSVMYRPLKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKITHLVCYKFEGEKYELASRLQTIKLVNHRWLEDCLKDWTLLPEEKYKKSGYELETMAEEAKDSEEEAEDLMPGKSGGRNITKSPFSSKIDTATTHNSSRPVIVESNAFPGSAAPEGLRQANEGHESLLILKNENRSDQTRSIHHDDLKSSSGDPGVSRHDASGQLPNTCAKTTKPKNTCVPEAVDCQNLGIPGNVDSSGHLPDLQAGTSEYGMLVNDLRLTSESVEGHVHSDAKGSAASNSRKNLRFSPPSGLNENLGNLSDPSAAPLNNLKLRNDLEASSSKVEKASDSINFAFVEGYGKGNDFSNKKGPSSLLPKKRTIEAPTKFKSKTTTDAKLSIERSPLADSNKLPEIEHHFPVGRDDIKDPETLSSKSLQDDDAPKINGKPDIAGFGREEVAQDGDETEPHNGRSDLECSYSSKKKSRNDESTGRATLDLCNKVSDKLIRKSPHKKTVAKKCLGSRPKSGGANVKKKGLISLNESTPQADGAGGLSGGKETAVCDGKKLHKSSKIVSVETSMEQDSVCKSGENANGREFQDEETDALVDKSEYKGLAVDEDNCESVNLLRKSVAQTEEKLEATHHASKSKSKPPKEGTDGTTPVVLEPVDSTSKVKGKPKGRKLTEGRTKKATFTKDIKRPEKAASSERRDETNMESMETVLFPAGKNSSSAVLTNNAGSFQEVEKENRPIDGEGIGDGINIENSVLKNSAGQAKINQKTRKKALNSSISEHDKILKREPACFIVSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYITACSQAGKFLAEEPYEWHKSGLSEDGAINLEAPRRWRLLKEKTGHGVLYGMRIIVYGDYIVPPLDTLKRVVKAGDGTILATSPPYNRFLDTGVDYAIVSPGMPRVDTWVQEFLKHEIPCVLADYLVEYVCKPGFSLEKHVQYGTHAWAERSFAKLQRKAEEIIKNPPEANDDNDTACHVCGSRDRGDVMLICGDERGSVGCGVGIHIDCCDPPLKEVPEEDWFCPRCSETRNCSNSNKKRKKGVLSSSKSK 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0312 1200 MobiDBLite consensus disorder prediction 379 408 - -
Lele16g0312 1200 ProSiteProfiles Zinc finger PHD-type profile. 1123 1179 IPR019787 -
Lele16g0312 1200 Pfam PHD-finger 1126 1178 IPR019787 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 1179 1200 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 717 736 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 492 529 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 656 674 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 538 574 - -
Lele16g0312 1200 CDD BRCT_PAXIP1_rpt3 14 91 - -
Lele16g0312 1200 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 698 1191 IPR044254 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 300 314 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 278 298 - -
Lele16g0312 1200 Pfam twin BRCT domain 111 175 IPR001357 -
Lele16g0312 1200 Pfam BRCA1 C Terminus (BRCT) domain 886 952 IPR001357 -
Lele16g0312 1200 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Lele16g0312 1200 SMART BRCT_7 994 1081 IPR001357 -
Lele16g0312 1200 SMART BRCT_7 106 183 IPR001357 -
Lele16g0312 1200 SMART BRCT_7 8 86 IPR001357 -
Lele16g0312 1200 SMART BRCT_7 874 956 IPR001357 -
Lele16g0312 1200 Gene3D BRCT domain 994 1087 IPR036420 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 466 577 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 754 796 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 278 314 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 656 687 - -
Lele16g0312 1200 Gene3D BRCT domain 1 95 IPR036420 -
Lele16g0312 1200 SUPERFAMILY FYVE/PHD zinc finger 1103 1177 IPR011011 -
Lele16g0312 1200 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 593 643 - -
Lele16g0312 1200 SUPERFAMILY BRCT domain 884 986 IPR036420 -
Lele16g0312 1200 CDD BRCT_TopBP1_rpt7 881 956 - -
Lele16g0312 1200 ProSiteProfiles BRCT domain profile. 884 966 IPR001357 -
Lele16g0312 1200 Gene3D BRCT domain 99 220 IPR036420 -
Lele16g0312 1200 SUPERFAMILY BRCT domain 7 93 IPR036420 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 203 241 - -
Lele16g0312 1200 SMART PHD_3 1125 1177 IPR001965 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 224 241 - -
Lele16g0312 1200 Gene3D BRCT domain 877 992 IPR036420 -
Lele16g0312 1200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1088 1192 IPR013083 -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 371 408 - -
Lele16g0312 1200 MobiDBLite consensus disorder prediction 717 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0312 Lele-ChrLele16 1749344 1755619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0312 129 214 Core DNA Replication Machinery Family AT4G02110 72.093 5.58e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele16g0312 BRCT 1.6e-07 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2036 14 26296954 26303230 Lele16g0312 16 1749344 1755619 hybridization