Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0311 ATGACAATGGCCGTCGCTACTACCTCCTCTCTCAATGCTTCAGAAAAGAAGCACTGGTGGCTCACCAACCGAAAGATTGTTGAGAAATACATCAAAGACGCTCGCGGCCTCATTGCGACCCAAGAACAGAGCGAGATCGCATGGGCTCTGAACCTTGTAGACGCGGCACTAGCCATATCCCCACGCCTAGACCAGGCGCTCGAGCTCAGAGCCAGGTCTCTTCTTTATCTCCGGCGTTTTAAGGACGTCGCCGATATGCTTCAGGACTACATTCCCAGCCTCAAGATGGCAGTCGAGGACTCGGGATCCTGTTCTTCGGATAGTTCGTCTCAGCAGCTCTCGAGGGAGGGAGTGAAGCTGCTCTTGTCTTCGGAGTCGTCGTCGCCGGATCAGGGTTTCAAGTGCTTCTCCGTCTCGGACTTGAAGAAGAAGGTGATGGCAGGACTGTGTAAAAGTGGCGCGAAGGGAGGGCAATGGAGATACTTGGTGCTGGGTCAAGCATGTTGCCATCTCGGTCTGATGGAGGATGCGCTGGTTCTTCTCCAAACCGGGAAACGACTTGCCAGCGCCGCCTTCCGCCGCGAAAGCGTTTGCTGGTCCGACGACAGCTTCTCTTTAACAAACATTCCTTTCTCCGGTGACGCGACCAACCCCCCTCCTACAACTCCACCTCGGACACCTCTTACGGAATTTGAGAGCGTCACCCAACTCCTTTGCCACATCAAACTCCTCCTCCGCCGTCGCACTGCGGCGATATCCGCCCTCGACGCCGGTCTCTATTCTGAGGCCATCCGCCACTTCTCCAAAATCGTCGACGTCCGCCGTGGCGCTCCGCAAGCCTTTCTCGCCGAATGCTATATGCACAGAGCCTCTGCCTACCGTTCCGCAGGCCGAATAGCAGAGTCCATTGCGGATTGTAATCGCACACTGGCTTTGGACCCCAGTTGCATTCAAGCTCTTGATACCAGAGCTGCCCTTCTAGAATCCATTCGATGCTTGCCCGATTGCCTACATGATCTTGAACACTTGAAGCTTTTGTACAATACAATATTGCGGGATCGTAAGCTTCCAGGTCCTGCTTGGAAGCGTCATAATGTAAGGTACAGAGAGATTCCTGGGAAACTCTGCGCTCTCACGACGAAAATTCAAGAACTGAAGCGAAGGGTGGCTTCAGGGGAAACTGGTAATGTGGATTACTACGCTTTGATTGGATTGCGGCGTGGTTGCTCTCGATCGGAGTTGGAGAGGGCTCATTTATTGCTCCGTTTACGGCACAAGCCGGATAAAGCAACCAACTTCATTGATCGCTGCGAGCTTGCGGACGAAAGGGATCTTGAATCGGTGAAGGAGAGGTCAAAGATGTCAGCATTGTTATTGTACAGATTGATTCAGAAGGGTTACACAAATGTGATGGCTACAATCATGGATGAAGAAGCCGCCGAGGAGCAGAGGAAGAAGGCGGTGGCTGCTTTGCAAGCTGTACAAGCAGCAATTCAGGTTCCGGAAAAAAGTGAGCGCAGAACGGACTACGAGGGGAAGAAATCAGAGAAAACGGTATCTTCATCGACTGTAAACCCTTCTGTATTCCAAGGGGTGTTTTGCCGTGATCTTGCCGTCGTTGGGAGCTTGCTTTCTCAAGCTGGATTCAACCGTTCTATTCCAATGAAATATGAGGCATTGAGCTGCCTATTTTGTTGA 1698 0.5212 MTMAVATTSSLNASEKKHWWLTNRKIVEKYIKDARGLIATQEQSEIAWALNLVDAALAISPRLDQALELRARSLLYLRRFKDVADMLQDYIPSLKMAVEDSGSCSSDSSSQQLSREGVKLLLSSESSSPDQGFKCFSVSDLKKKVMAGLCKSGAKGGQWRYLVLGQACCHLGLMEDALVLLQTGKRLASAAFRRESVCWSDDSFSLTNIPFSGDATNPPPTTPPRTPLTEFESVTQLLCHIKLLLRRRTAAISALDAGLYSEAIRHFSKIVDVRRGAPQAFLAECYMHRASAYRSAGRIAESIADCNRTLALDPSCIQALDTRAALLESIRCLPDCLHDLEHLKLLYNTILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKRRVASGETGNVDYYALIGLRRGCSRSELERAHLLLRLRHKPDKATNFIDRCELADERDLESVKERSKMSALLLYRLIQKGYTNVMATIMDEEAAEEQRKKAVAALQAVQAAIQVPEKSERRTDYEGKKSEKTVSSSTVNPSVFQGVFCRDLAVVGSLLSQAGFNRSIPMKYEALSCLFC 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0311 565 Gene3D Tetratricopeptide repeat domain 240 356 IPR011990 GO:0005515
Lele16g0311 565 SMART tpr_5 283 316 IPR019734 GO:0005515
Lele16g0311 565 Coils Coil 477 497 - -
Lele16g0311 565 SUPERFAMILY TPR-like 251 344 IPR011990 GO:0005515
Lele16g0311 565 Gene3D DnaJ domain 381 526 IPR036869 -
Lele16g0311 565 SUPERFAMILY Chaperone J-domain 394 432 IPR036869 -
Lele16g0311 565 PANTHER OS01G0273500 PROTEIN 7 562 - -
Lele16g0311 565 CDD DnaJ 398 432 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0311 Lele-ChrLele16 1740129 1742470 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0172 06 1051817 1054534 Lele16g0311 16 1740129 1742470 CCT
Lele07g0372 07 2110581 2115131 Lele16g0311 16 1740129 1742470 CCT
Lele08g0177 08 1094628 1097350 Lele16g0311 16 1740129 1742470 CCT
Lele05g0353 05 2026728 2029975 Lele16g0311 16 1740129 1742470 CCT
Lele13g2110 13 27958966 27963017 Lele16g0311 16 1740129 1742470 hybridization
Lele14g2037 14 26308116 26310461 Lele16g0311 16 1740129 1742470 hybridization