Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0310 ATGGCTTCCTTCTCATGCATCCTGAGTATCAGTTTGATGCTTCTGGCGGTTGTGGGCGGAGAAGGACGTGATCCATTTGCATGCGACCCGAAAGTGGCTAACACGAGTAAGCTTCCGTTTTGCCGAACATCGCTGTCGACAACTGCGAGAGTGAAGGACCTGATCGGAAGGTTGACTCTCCCAGAGAAAGTAAGGCTGCTGGTGAACAATGCGGCGGGGCTTCCACGGCTCGGGATTCAAGGGTACGAGTGGTGGTCCGAAGCACTGCATGGCATTTCCAATGTGGGTCCCGGCACCAAGTTTGCCGGGCCATTCCCTGGCGCCACCAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCATCCCTGTGGGAGGCTATCGGACGGGTAGTGTCAGACGAAGCAAGAGCAATGTATAACGGAGGAACGGCGGGGTTGACGTACTGGAGCCCAAACGTGAACATATTCCGGGATCCCAGGTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCCCATCGTGGCAGGTAGATATGCGGCCCATTACGTGAGGGGGTTACAGGGAACGGATGCCAACAGGTTGAAGGTTGCCGCTTGTTGCAAGCATTTTACGGCTTACGATCTTGATAATTGGAATGGCATGGATCGCTTCCACTTTAATGCTCAGGTTAGCAAGCAGGACATAGAGGACACGTTCGACGTGCCATTCAGGATGTGTGTGAAGGAAGGGAATGTGGCGAGTGTCATGTGTTCGTATAATCAGGTGAATGGTAAACCCACGTGCGCTGACCCCAACCTGCTGAAGCGAACAGTTCGTGGCCAGTGGCATCTTAATGGCTACATTGTCTCCGACTGTGACTCCGTCGGCGTCTTCTTCTCCAACCAACATTATACTTCAACCCCCGAGGAGGCTGCCGCCGATGCCATCAGAGCAGGTTTGGATTTGGACTGTGGCCCTTTCCTTGCACAGTACACTCAGGGCGCCGTCAACAAGGGATTGCTCACCGAAGCTGATGTCAACGGTGCCCTCGTTAATACCCTAACTGTCCAAATGAGACTGGGCATGTTCGACGGAGAACCATCGGCTCAGCCGTATGGCCACTTGGGTTCAAAAGATGTGTGCAACCCTGCGCACCAGGATCTTGCCCTCCAAGCTGCCACCCAAGGAATCGTGCTCCTTAAGAATGATGGTCCTACTTTGCCCCTCTCCCCACGACGTCACCGCACCGTGGCTGTCATTGGTCCCAATTCTAATGTCACCGTTACCATGATCGGTAACTATGCAGGTATTGCTTGCGGATACACCAGCCCGTTGCAAGGAATAGGGAAATATGCGACGACTATTCACCAGCTAGGTTGTGTGAATGTGGCTTGTGCTGATGACAAACAGTTTGGAGGTGCTTCAGACGCAGCGCGTCGAGCCGACGCAACGGTTCTGGTGATGGGCCTAGATCAGTCCATTGAGGCTGAAACCGTTGACAGGACCGGCTTGCTTCTGCCCGGCCATCAGCAAGACCTCGTATCAAAGGTGGCGGCAGCCTCTAAGGGCCCAACTATTTTGGTCTTGATGTCCGGCGGCCCCGTTGATGTCACTTTCGCCAAGAACGATCCACGTGTTGCTGCCATCTTGTGGGCTGGCTATCCAGGCCAAGCCGGTGGTGCCGCCATTGCCGATATCTTGTTTGGAACTGCAAACCCAGGTGGCAAGCTGCCAATGACATGGTATCCACAAGATTACCTCACCAACTTGCCGATGACAGATATGGCAATGAGGGAGAGGCGGTCCAGTGGATATCCGGGAAGAACTTACAGATTTTACAAAGGGCCGGTGGTGTACCCGTTTGGTTACGGATTAAGCTACACCCAATTTGTTCACACCTTGGCTAGAGCGCCGAAGGTGGTGTCGGTTCCGGTGGATGGGCACCGCCGTGGGAATAACACCAACATTTCAAACAAGGCGATTAGAGTTACGCATGCAAGGTGCGGGAAGCTGTCCGTAAGCCTCCACGTGGATGTTAAGAATGTTGGGTCCAGGGAAGGCATTCACACGTTGTTAGTATACTCGGCACCACCTGCGGGCGGACAATGGGCACCGCACAAGCAACTGGTGGCCTTCGAGAAAGTGCACGTTCCTGCCAAAGCTCAGCAACGAGTGAGACTCAATATTCACGTGTGCAAATTGCTGAGTGTAGTGGACCGTTCTGGGATTAGGAGAATTCCCATGGGTGATCATAGTCTTCACATTGGCGATGTCAAACACTCCATTTCGCTTCGAGCACAAACACTCGGGATTATCAAGACCTGA 2310 0.5364 MASFSCILSISLMLLAVVGGEGRDPFACDPKVANTSKLPFCRTSLSTTARVKDLIGRLTLPEKVRLLVNNAAGLPRLGIQGYEWWSEALHGISNVGPGTKFAGPFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPIVAGRYAAHYVRGLQGTDANRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFRMCVKEGNVASVMCSYNQVNGKPTCADPNLLKRTVRGQWHLNGYIVSDCDSVGVFFSNQHYTSTPEEAAADAIRAGLDLDCGPFLAQYTQGAVNKGLLTEADVNGALVNTLTVQMRLGMFDGEPSAQPYGHLGSKDVCNPAHQDLALQAATQGIVLLKNDGPTLPLSPRRHRTVAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGKYATTIHQLGCVNVACADDKQFGGASDAARRADATVLVMGLDQSIEAETVDRTGLLLPGHQQDLVSKVAAASKGPTILVLMSGGPVDVTFAKNDPRVAAILWAGYPGQAGGAAIADILFGTANPGGKLPMTWYPQDYLTNLPMTDMAMRERRSSGYPGRTYRFYKGPVVYPFGYGLSYTQFVHTLARAPKVVSVPVDGHRRGNNTNISNKAIRVTHARCGKLSVSLHVDVKNVGSREGIHTLLVYSAPPAGGQWAPHKQLVAFEKVHVPAKAQQRVRLNIHVCKLLSVVDRSGIRRIPMGDHSLHIGDVKHSISLRAQTLGIIKT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0310 769 FunFam probable beta-D-xylosidase 2 377 623 - -
Lele16g0310 769 Pfam Glycosyl hydrolase family 3 N terminal domain 107 347 IPR001764 GO:0004553|GO:0005975
Lele16g0310 769 Gene3D - 50 366 IPR036962 GO:0004553|GO:0005975
Lele16g0310 769 SUPERFAMILY (Trans)glycosidases 38 391 IPR017853 -
Lele16g0310 769 FunFam Probable beta-D-xylosidase 2 647 766 - -
Lele16g0310 769 Pfam Fibronectin type III-like domain 685 752 IPR026891 -
Lele16g0310 769 FunFam probable beta-D-xylosidase 7 50 364 - -
Lele16g0310 769 PANTHER SUGAR HYDROLASE-RELATED 18 757 IPR044993 GO:0009044|GO:0045493
Lele16g0310 769 SMART Fn3_like_2 684 754 IPR026891 -
Lele16g0310 769 Pfam Glycosyl hydrolase family 3 C-terminal domain 392 622 IPR002772 GO:0004553|GO:0005975
Lele16g0310 769 Gene3D Immunoglobulins 646 767 IPR013783 -
Lele16g0310 769 Gene3D - 377 623 IPR036881 GO:0004553|GO:0005975
Lele16g0310 769 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 392 625 IPR036881 GO:0004553|GO:0005975
Lele16g0310 769 PRINTS Glycosyl hydrolase family 3 signature 272 290 IPR001764 GO:0004553|GO:0005975
Lele16g0310 769 PRINTS Glycosyl hydrolase family 3 signature 111 130 IPR001764 GO:0004553|GO:0005975
Lele16g0310 769 PRINTS Glycosyl hydrolase family 3 signature 198 214 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0310 Lele-ChrLele16 1727790 1730378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0310 3 769 Glycoside Hydrolase AT1G02640 72.881 0.0 1180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0170 06 1039531 1041936 Lele16g0310 16 1727790 1730378 CCT
Lele07g0370 07 2093054 2095413 Lele16g0310 16 1727790 1730378 CCT
Lele08g0174 08 1085452 1087857 Lele16g0310 16 1727790 1730378 CCT
Lele05g0351 05 2012306 2017464 Lele16g0310 16 1727790 1730378 CCT
Lele13g2113 13 27971705 27972325 Lele16g0310 16 1727790 1730378 hybridization
Lele14g2039 14 26318213 26325342 Lele16g0310 16 1727790 1730378 hybridization