Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0305 ATGTGTCCACAAATCTTCCCCGGTCTCGTTTATATATCTTCTCATTTCTTAAACCCCCGTCCTAAATCGAACCCATACTATCTTGAATTACAGCACCGATCGAGGTGGATACGGAAGGTAATCGAAGGAGGAGAAGAAATGGCAACCATATCTGGTCTTAGCCTTTCGAGCCCTGGGGTTTTGGGTAGGGTGTCGGAGTCACAGAAGGCCCATACGGTAAAGTTTCCGGTGCGGCTAGGCCAAAGATTCGGGTCGGGTCGCATGGTGGCAGTTCGGCCTGTGCGGGCGGCACCGGATCGCATGTCGGAGAAGGTGGAAGAGAGCATAAAGAAGGCAGAGGAGACGTGCTCAGACAACCCGGCGAGCGGTGAGTGCGTGGCGGCTTGGGATGAAGTGGAGGAGCTAAGCGCGGCGGCCAGCCATGCCAGAGACCGGAAGAAGGAGTCGGACCCACTGGAGAACTACTGCAAGGACAACCCAGAGACCGACGAGTGCCGCACATATGATAACTGA 513 0.5517 MCPQIFPGLVYISSHFLNPRPKSNPYYLELQHRSRWIRKVIEGGEEMATISGLSLSSPGVLGRVSESQKAHTVKFPVRLGQRFGSGRMVAVRPVRAAPDRMSEKVEESIKKAEETCSDNPASGECVAAWDEVEELSAAASHARDRKKESDPLENYCKDNPETDECRTYDN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0305 170 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 65 170 IPR039314 -
Lele16g0305 170 SMART CP12_2 101 170 IPR003823 -
Lele16g0305 170 Pfam CP12 domain 102 169 - -
Lele16g0305 170 MobiDBLite consensus disorder prediction 139 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0305 Lele-ChrLele16 1694369 1694881 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0161 06 975025 975459 Lele16g0305 16 1694369 1694881 CCT
Lele07g0360 07 2001905 2003249 Lele16g0305 16 1694369 1694881 CCT
Lele08g0164 08 1006112 1006546 Lele16g0305 16 1694369 1694881 CCT
Lele16g0305 16 1694369 1694881 Lele05g0353 05 2026728 2029975 CCT
Lele16g0305 16 1694369 1694881 Lele06g0170 06 1039531 1041936 CCT
Lele16g0305 16 1694369 1694881 Lele07g0370 07 2093054 2095413 CCT
Lele16g0305 16 1694369 1694881 Lele08g0174 08 1085452 1087857 CCT
Lele13g2120 13 28016581 28016955 Lele16g0305 16 1694369 1694881 hybridization