Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0299 ATGGCTCAGACGTGCGTCTCCACCCAGGCATCCTCTCTTAGATTCAACCCTCTTTTTCTTTCGTCGAGCCCTAGTTCTTGTTCCGACACTCAGAAGCTTTCTTTCGCCCTGGAACCTTTCAGGTCGAGGAAATTAAAGAAATTGGTGGGAAATAAAAGGAATACTCAAATCTCTCCTGTGAAGGCTGTGTACGCTAATGATTTTTGGGCACCTCAGGGGAGTTCACGCCAGGGTATTTGGTCCATAAGAGATGATCTGCAAATCCCATCTTCCCCATATTTCCCTACTTATGCTCAAGGACAAGGTCCGCCCCCCATGGTGCAGGAGCGTTTTCAGAGTGTTATAAGTCAGCTTTTTCAATATAGAATAATTCGTTGTGGTGGAGCCGTTGATGATGATATGGCTAATATCATAGTTGCTCAGCTTCTTTACCTTGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCTGGAGGATCAGTAACAGCCGGTATGGCAATATTTGATACAATGAGACATATCCGACCTGATGTGTCAACTGTTTGTGTTGGACTAGCAGCTAGTATGGGGGCTTTTCTGCTTAGCGCTGGGACTAAAGGAAAGAGATACAGCCTGCCTAATTCAAGGATAATGATTCATCAACCGCTTGGTGGAGCTCAAGGAGGCCAAACAGACATAGATATTCAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGGTATCTGTCGTATCACACTGGCCAAAGTCTAGGGAAGATTAACGAGGACACAGACAGGGATTTCTTCATGAGTGCAAAAGAAGCCAAAGAATATGGACTTATCGATGGCGTCATAATGAATCCTCTCAAAGCTCTTCAGCCATTAGCTGCTGCTGCTGCAGAGGGCACAGATCAGGCTACTGTCTGA 924 0.4491 MAQTCVSTQASSLRFNPLFLSSSPSSCSDTQKLSFALEPFRSRKLKKLVGNKRNTQISPVKAVYANDFWAPQGSSRQGIWSIRDDLQIPSSPYFPTYAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQSLGKINEDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAAAAAEGTDQATV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0299 307 FunFam ATP-dependent Clp protease proteolytic subunit 103 287 - -
Lele16g0299 307 SUPERFAMILY ClpP/crotonase 109 284 IPR029045 -
Lele16g0299 307 ProSitePatterns Endopeptidase Clp serine active site. 184 195 IPR018215 -
Lele16g0299 307 PRINTS Clp protease catalytic subunit P signature 113 128 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 PRINTS Clp protease catalytic subunit P signature 184 201 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 PRINTS Clp protease catalytic subunit P signature 205 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 PRINTS Clp protease catalytic subunit P signature 262 281 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 PRINTS Clp protease catalytic subunit P signature 153 173 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 CDD S14_ClpP_2 114 283 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 90 287 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele16g0299 307 ProSitePatterns Endopeptidase Clp histidine active site. 206 219 IPR033135 -
Lele16g0299 307 Gene3D - 104 287 - -
Lele16g0299 307 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 68 292 IPR023562 -
Lele16g0299 307 Pfam Clp protease 108 286 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0299 Lele-ChrLele16 1657363 1660486 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0299 16 1657363 1660486 Lele05g0347 05 1984574 1990111 CCT
Lele16g0299 16 1657363 1660486 Lele06g0166 06 1011636 1014189 CCT
Lele16g0299 16 1657363 1660486 Lele07g0366 07 2049907 2054404 CCT
Lele13g2127 13 28053595 28056587 Lele16g0299 16 1657363 1660486 hybridization
Lele14g2051 14 26385519 26388638 Lele16g0299 16 1657363 1660486 hybridization