Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0296 ATGTCAGCAGTTGGCGCTATGGAAACATGGATTAATCAGGTAGAACATGCGAAAACTGCAGCTTCAATTCCAGAATACAAGCCCGGTGTATTTGATGGCTTGTTCCTTAATTTGTTCCGCAACAAATTAGTAGCGGAGGTTGGATGGGATTCAAACAAACCCGGATATTATGGACTTATTGAAGTTGCGAACCGTCTAATGTTGAATGGCAGAACAAGAGCTGGTGCGATTGAAGCTGCTGAATATCAGTTTATGTGGAAAGATGCAAGTACCTGGAAGAAAGCAAATGTGCCAGTATCTGCATCAATACTTGTAAATTTCCGACACAGTTCAAATTTGGAGTCCTTCCCCCACAACCGGAAGATGACATCATCCTTAAAGAGCCCTGCCTGGAGGCATGTCCACATGCTGCCAAGCGAAGAGTCGTTGCCAGAAACACAGATGAAGCTCCGTGTCCCAAGATTTGATTGTGTTTTGACTCTCAAAACCAACCCTTTGAAGATGCAACTTTTCGGGCAATCAACGGCCTCGGTGATGTCGGTCCTCCCAGTTTCTATCTCAATCGGTGCCTTAAAAGTCATTTTTCCTCTGTTGCTGAAATGGTTGCTTGTATTATCTTGCTCAGTATTAATGGCTGACTCTAATGCATTATCTCCGGCTAGATCGCCTTCTACTACTATGGTCGTTTGTGATCTGCCACTACCCGCAAATCTCCATGGGCAAAAGCATCTACCATCCCATGGTGGACCAATTCCAACACCATCACCTACCCAACCTCCTTTATATAGTCCATCCTTGAGTACAGGTCACCCCCCGGCAAGTTCACATTCATCCAATCCATTCATGAAGGTCGGTGAATTAGGACCTCAAGTTTCTGGTTTTGGAGATAGTTCCCCTATTCATTCAACAGCTGTTGCGATTCCTTCTGGTTTGGCTCAGCCACCCTTATCCCCTTATGTTTCCAATTGTTGTAAACAAAACATGGTGTTGAAGCGTGGGAGCAAGAGTTGTCACTGTGTATATCCCATAAAACTAGACCTTCTCCTTTTGAATGTCTCTCAAAACTCTAATTGGAATCTTTTTCTCGACGAATTAGCTACCCAACTTGGATTGAAAATTTCCCAGATTGAATTGGTAAATTTTTATGTACTCACCCTATCAGCGTTAAATATATCAATGGATATCACTCCACATAAAGGGGCCAGTTTCTCTGCCGAAGAAGCATCTAGAATAAACTCTTCGCTTTCAATGCATAAGATTCAACTAGATCCTAGATTGGTGGGTGACTACAAACTTCTCAATTTGACGTGGTATGAGCCTCCACCTCCATCTCAAGCTCCGACGTCTGTTGCATCACCTATGAAAGCTCCTATTTACCACAAACCAGCAACTTCAACACCAAATGCTTCAAATAGGAGAGGGCATTCAAGTTTGTATGCTATTCTTGGAATTGGTGCTGGCATACTCTTCATTGCCATTATATCTGTACTCGTACTTTGTTTATGCACATTGAGGCCTAAGACCAAAGGACCATCAATAGATACCGAGAAGCCAAGGACAGAAGGTGCAGTTTCAGCTGCAGGGTCTTTTCCTCATCCGACCAGCACAAGATTTATTGCTTATGAAGAACTTAAAGAAGCGACAAACAACTTTGAAGCAGCAAGCTTACTTGGAGAAGGCGGGTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACGGCTGTAGCTATTAAGAGGCTTACTAATGGAGGGCAACAAGGGGATAAAGAGTTTTTGGTTGAGGTTGAAATGCTTAGTCGCTTGCATCATCGTAATCTTGTAAAATTGGTGGGATACTATAGCAATCGTGACTCATCGCAAAATCTATTATGCTATGAGCTTGTTCCAAATGGAAGTTTGGAGGCGTGGCTTCATGGTCCCTTAGGAATAAATTGTCCTTTGGATTGGGATACCAGAATGAAGATTGCGCTTGATGCTGCAAGAGGACTTGCATACTTACATGAAGACTCGCAGCCCTGTGTTATACACAGAGATTTCAAAGCGTCCAACATATTGCTGGAAAACAACTTCCATGCTAAAGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGAGCTAATTACCTGTCTACTCGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCCATGACAGGTCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTGCTGGAACTGCTGACTGGAAGGAAACCTGTTGATATGTCACAGCCAGCTGGACAAGAGAACCTGGTTACTTGGGCAAGGCCAATCCTAAGAGATAAAGACCGGTTGGAAGAACTTGCTGATCCAAGGCTGGGGGGAAAATATCCGAAGGAAGATTTTGTCCGGGTTTGTACTATTGCTGCAGCCTGCGTCGCTCCTGAAGCAAGCCAACGACCCACAATGGGGGAAGTTGTACAGTCACTTAAAATGGTGCAGCGCATGACCGAACATCAGTATTCCATGGGGGCCCCCTCCAATACAAGGACCAACCTAAGACAGTCCTCTACTACTTTCGAGTCCGATGGGACATCTTCTATGTTCTCTTCAGGTCCCTACTCTGGTCTAAGTGTCTTTGACAATGACAACGTTTCTAGGACGGCAGTTTTCTCTGAAGATCTTCATGAAGGAAGATGA 2688 0.4401 MSAVGAMETWINQVEHAKTAASIPEYKPGVFDGLFLNLFRNKLVAEVGWDSNKPGYYGLIEVANRLMLNGRTRAGAIEAAEYQFMWKDASTWKKANVPVSASILVNFRHSSNLESFPHNRKMTSSLKSPAWRHVHMLPSEESLPETQMKLRVPRFDCVLTLKTNPLKMQLFGQSTASVMSVLPVSISIGALKVIFPLLLKWLLVLSCSVLMADSNALSPARSPSTTMVVCDLPLPANLHGQKHLPSHGGPIPTPSPTQPPLYSPSLSTGHPPASSHSSNPFMKVGELGPQVSGFGDSSPIHSTAVAIPSGLAQPPLSPYVSNCCKQNMVLKRGSKSCHCVYPIKLDLLLLNVSQNSNWNLFLDELATQLGLKISQIELVNFYVLTLSALNISMDITPHKGASFSAEEASRINSSLSMHKIQLDPRLVGDYKLLNLTWYEPPPPSQAPTSVASPMKAPIYHKPATSTPNASNRRGHSSLYAILGIGAGILFIAIISVLVLCLCTLRPKTKGPSIDTEKPRTEGAVSAAGSFPHPTSTRFIAYEELKEATNNFEAASLLGEGGFGRVFKGVLNDGTAVAIKRLTNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPAGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRMTEHQYSMGAPSNTRTNLRQSSTTFESDGTSSMFSSGPYSGLSVFDNDNVSRTAVFSEDLHEGR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0296 895 MobiDBLite consensus disorder prediction 839 864 - -
Lele16g0296 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Lele16g0296 895 MobiDBLite consensus disorder prediction 241 281 - -
Lele16g0296 895 ProSitePatterns Protein kinases ATP-binding region signature. 557 579 IPR017441 GO:0005524
Lele16g0296 895 CDD STKc_IRAK 557 827 - -
Lele16g0296 895 Pfam Protein kinase domain 552 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0296 895 Gene3D Phosphorylase Kinase; domain 1 533 628 - -
Lele16g0296 895 Gene3D Transferase(Phosphotransferase) domain 1 629 850 - -
Lele16g0296 895 PANTHER OS01G0750732 PROTEIN 321 853 - -
Lele16g0296 895 FunFam Receptor-like serine/threonine-protein kinase ALE2 531 628 - -
Lele16g0296 895 FunFam Receptor-like serine/threonine-protein kinase ALE2 629 843 - -
Lele16g0296 895 MobiDBLite consensus disorder prediction 262 281 - -
Lele16g0296 895 ProSiteProfiles Protein kinase domain profile. 551 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0296 895 SUPERFAMILY Protein kinase-like (PK-like) 529 828 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0296 Lele-ChrLele16 1639541 1650490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0296 179 895 Receptor kinase-like Gene Family AT4G02010 67.308 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele16g0296 Pkinase 2.9e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0296 16 1639541 1650490 Lele05g0342 05 1943836 1944676 CCT
Lele16g0296 16 1639541 1650490 Lele06g0161 06 975025 975459 CCT
Lele16g0296 16 1639541 1650490 Lele07g0360 07 2001905 2003249 CCT
Lele16g0296 16 1639541 1650490 Lele08g0164 08 1006112 1006546 CCT
Lele13g2130 13 28073026 28076132 Lele16g0296 16 1639541 1650490 hybridization
Lele14g2055 14 26403677 26406177 Lele16g0296 16 1639541 1650490 hybridization