Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0285 ATGGAGGGGAGTTCTGGAAGTAGCCCGTCCATGCTCGATAGTGGAGACATGGGTCAACACGCTGAACCTAATGATCAAAGCGAACAACTAAAATCAATCCTCCTTCCTACATACCAAGTGCTCTTGCTAAATCTTCGAGATGGAGCAGAGTATTGGTTTCAAGCAAATGCACATTGCAGATTGAGGCAAGCGACGCTTCTGAAGACCCAATGGAATGTGAAAGCACCTGATCTGAAGCTGGGGATGGCTGAGAGTAACAGAGCTAATATCACTGTCCGCCAAGACGGTACCGGTGACTTCACCACCATCAGACAAGTGCTGGATAGCATTCCGCCACGCAACACCGGAAGAGTTATAGTTTCGATTGGACCGGGAGTTTATAGGGAGAAGATTGTGATACCAAGAAATATGCACTTCATAACATTGTTAGGGGACGCTACAAGTCCCCCAACTATTACAGGGAACGATACGGCATCGGTCATTGGGAGGGATGGGATGCCATTTGGCACATCCCACAATGCCACCGTTGCTGTGGATGCTAATTATTTTGTTGCCGTCAACATCAAATTTGAGAACACGGCATCGCAAGAGGTAGGAAAGGAGGGAGGACAGGGCGTGGCACTTCGCATCTCAGGGACCAAGGCTGCATTTTACAACTGCAGCTTCTTTGGTGATCCAGACACGCTCTACGACCACAGAGGACTTCACTACTTCAACAACTGCTTCATTCAGGGCTCTGTTGATTTCATCTTCGGCTCGGGCAGATCCCTTTACGAGAACTGCTATCTGAACACAAAAGCGAAGAAGGCGGTGTCAATCACGGCTCAAAAGCGGACGAATGAGTCGTTAGAGAGCGGGTTTTCGTTCAAGAATTGCGTGATAACGGGAAGTGGGCAAGTTTATCTGGGAAGAGCGTGGGGTGATTATTCCAGGGTTGTTTTCTCTTACACCTTCATGGACAAGAATGTTGTGCGCCATGGCTGGAGTGACTGGGGTGAGCAAAAGCGCGACCTGAGAGTGTATTATGGAGAATACAAGTGCAGTGGGCCTGGGGCTAACTTGACTGCAAGAGTGGCGTGGGTACACATACTCACCGACCAAGAGGCTCAGCCTTTTCTTGGAACTCATTACGTTGAAGGCGACACTTGGCTCTTTCCCCTCACTTTTGACTCCTGCTTGCTTTAA 1185 0.4903 MEGSSGSSPSMLDSGDMGQHAEPNDQSEQLKSILLPTYQVLLLNLRDGAEYWFQANAHCRLRQATLLKTQWNVKAPDLKLGMAESNRANITVRQDGTGDFTTIRQVLDSIPPRNTGRVIVSIGPGVYREKIVIPRNMHFITLLGDATSPPTITGNDTASVIGRDGMPFGTSHNATVAVDANYFVAVNIKFENTASQEVGKEGGQGVALRISGTKAAFYNCSFFGDPDTLYDHRGLHYFNNCFIQGSVDFIFGSGRSLYENCYLNTKAKKAVSITAQKRTNESLESGFSFKNCVITGSGQVYLGRAWGDYSRVVFSYTFMDKNVVRHGWSDWGEQKRDLRVYYGEYKCSGPGANLTARVAWVHILTDQEAQPFLGTHYVEGDTWLFPLTFDSCLL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0285 394 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Lele16g0285 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 84 384 - -
Lele16g0285 394 SUPERFAMILY Pectin lyase-like 87 390 IPR011050 -
Lele16g0285 394 Gene3D - 84 390 IPR012334 -
Lele16g0285 394 FunFam Pectinesterase 85 386 - -
Lele16g0285 394 Pfam Pectinesterase 89 381 IPR000070 GO:0030599|GO:0042545
Lele16g0285 394 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0285 Lele-ChrLele16 1572186 1574683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0285 90 386 Carbohydrate Esterase AT5G47500 43.144 1.07e-83 258