LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g0275	ATGATTATGGATTATACCAGTATTACTGACATCAAAACGGATCCAACCGATGATTTTGGAGGGCGTGCCATTTATCTTACGTCTCCTTGTGCACCACTTGCAAGGTTGCTTGAAAGTCGAAACGGAAACTGCAAGCCAAATTTTGTTCACCAAGTTCTTATTAAGCACGGAGCTACGCAGGCTCATATTCGCTCCCAGTCCAAGTCGCACACTAACATGGGTGACTGGGTGAGACTGGATAGGATTAGATTCACTGACCCAAAGCACTTCCACACCGTAGATCCATCTCTGCTCGCTTCCCCTGCATTTCCCCTTTCATCGGTGAGTTTCTCTTCCGACTTCTCCTGGGCATTTCAAACAACAGGGTTTCGTTGCTTTCCTGCTCTTTGTCTCTCTGTTCATTTATATATTCTGCGTTCAATGTCGGTTATGCTAAACGTTAATTCACTCTGCAAACTTGAAAGTCAAGTTTGCGGCCAAGTCATTAGGCTGCTCCCTACAGGGGATGATGTAACACATGCTTCTAAGTTAACAGATGTAAACGCAAATACAAATGGCATTGATAGGTTGCCTGCCGAGATGAATGACATGAAAATTAGGGACGACAAGGAAATGGAAGCAACTGTTATAGATGGAAACGGGACTGAAACCGGACATATAATTGTCACCACCATTGGCGTTAAAAATGGCCAGCCAAAGCAAACAATAAGCTACATGGCTGAGCATGTTATTGGGCATGGATCTTTTGGAGTTGTTTTCCAGGCAAAATGCTTGGAGACGGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGAGAACTGCAAACCATGCGTCTTCTTGACCACCCTAACGTTGTATCTTTGAGGCATTGTTTCTTTTCAACAACTGAAAAAGAGGAGCTTTACCTGAACTTGGTATTAGAGTATGTTCCTGAGACTCTCCATCGGGTCATCAGACACTATAACAAAATGAATCAAAGGATGCCGTTGATATATGTCAAACTTTATTTTTACCAGATATGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTGTGTCACAGGGACATAAAACCTCAAAATCTACTGGTTAATCCTCGCACACATCAATTGAAGCTATGTGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGGGAACCGAACATATCATATATCTGTTCTAGGTACTATAGAGCGCCTGAGCTCATCTTTGGTGCTACTGAGTACACCACAGCCATTGACATCTGGTCTGCTGGTTGCGTACTTGGTGAACTATTGCTCGGTCAGCCTCTCTTTCCTGGCGAGAGTGGAGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTACACAGAGTTCAAATTCCCGCAAATTAAAGCTCATCCTTGGCACAAGATCTTTCACAAACGTATGCCATCTGGTGCTTTGGATCTTGTCTCAAGACTACTGCAGTACTCTCCCAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCACCCGTTCTTTGAGGAGCTGCGTGACCCAAACACTCGGTTGCCAAACGGGCGTTTCCTCCCGCCACTCTTCAACTTCAAGGCAAATGAGCTCAAGGGAGTGCCTGCTGAGACGCTGGTGAAGCTTATTCCACCACATGCAAGAAGGCAGTGTGCATTGTTTCGGGCGTGA	1725	0.4435	MIMDYTSITDIKTDPTDDFGGRAIYLTSPCAPLARLLESRNGNCKPNFVHQVLIKHGATQAHIRSQSKSHTNMGDWVRLDRIRFTDPKHFHTVDPSLLASPAFPLSSVSFSSDFSWAFQTTGFRCFPALCLSVHLYILRSMSVMLNVNSLCKLESQVCGQVIRLLPTGDDVTHASKLTDVNANTNGIDRLPAEMNDMKIRDDKEMEATVIDGNGTETGHIIVTTIGVKNGQPKQTISYMAEHVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLRHCFFSTTEKEELYLNLVLEYVPETLHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPRTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPSGALDLVSRLLQYSPNLRSTALEALVHPFFEELRDPNTRLPNGRFLPPLFNFKANELKGVPAETLVKLIPPHARRQCALFRA	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g0275	574	Pfam	Protein kinase domain	239	522	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele16g0275	574	Gene3D	Transferase(Phosphotransferase) domain 1	318	566	-	-
	Lele16g0275	574	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	359	371	IPR008271	GO:0004672\|GO:0006468
	Lele16g0275	574	FunFam	Glycogen synthase kinase-3 beta	222	317	-	-
	Lele16g0275	574	CDD	STKc_GSK3	233	525	IPR039192	-
	Lele16g0275	574	SUPERFAMILY	Protein kinase-like (PK-like)	237	546	IPR011009	-
	Lele16g0275	574	Gene3D	Phosphorylase Kinase; domain 1	222	317	-	-
	Lele16g0275	574	SMART	serkin_6	238	522	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele16g0275	574	FunFam	Shaggy-related protein kinase kappa	318	566	-	-
	Lele16g0275	574	ProSitePatterns	Protein kinases ATP-binding region signature.	244	268	IPR017441	GO:0005524
	Lele16g0275	574	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	202	568	-	-
	Lele16g0275	574	ProSiteProfiles	Protein kinase domain profile.	238	522	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g0275	Lele-ChrLele16	1515358	1521238	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g0275	244	529	MAP Kinase Gene Family	AT4G01370	36.610	7.21e-55	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele16g0275		Pkinase	1.2e-63	CL0016