Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0274 ATGGTGGCCGAAGCAGACCTTATGCGTCCACAGAGCACCCCTGCGTTGAATGTTCAGTGTTTTCCTAACGGAGCAAACATATGTGAGATCGAAGATGCCGCTGCCACAACGCCTCCGAGTTTTGACCGAGTTCGTGCTTCTCCACTAGCGTCTGCCGAGTTACTCAGTTCACAAGAAGATATTAAAGCTGCAGACGGAATATCAAATGCTGCTCTTGATTCTGCTGTTCTTCAATTTGTCCCAACCATCCGTTCTGGCAGTTTTGCTGACATTGGCCCCCGGAGATACATGGAAGATGAACACATAAGGATAGATGATTTGTCTTCTCACATGGGATCACTATATACATTTCCTGAACCAAGTGCCTTCTATGGGGTATTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATCCAGAAAAATGTAATGAGATTCTTCTTTGAAGATGCTAACTTCCCCCAGACATCTGAAGTTGATAATGTATTTTTACAAGAGGCAGAGAACTCCCTCAGAAAATCATTTCTTTTGGCTGACTTAGCTTTGGCTGATGATTGCAGTGTGAGCAACTCATCAGGGACCACGGCTCTTACTGCCTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGTGATTGCCGAGCAGTTCTCTGCCGTAAAGGAGAGGCGATTGACATGTCTCAAGATCACAGGCCTATTTATCCTGCAGAGCGGAGGCGAGTTGAAGAATTGGGCGGTCATGTAGACGATGGTTATCTTAATGGAGTTTTGTCAGTTTCTCGAGCCCTTGGGGACTGGGATATGAAGTTTCCTCGTGGTTCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGTCAAGTGGTTCTAACAGAGGATGATGAGTTCCTCATCATAGGTTGTGATGGAATTTGGGATGTCATGACAAGTCAACAGGCAGTTAGCGTTGTTCGCAGAAGCATGAGGCGGTATTATGACCCAGAGCGAAGTGCCAGGGACCTGGTCATGGAGGCACTGCGCCTCAGTACGTTTGATAATCTTACAGTGATTGTTGTGTGCTTCTCTTCTAATTCTATTGATCACAGGGAACCATCCCCTACTCGTCAGAGGAAATTGAGGTGCTGCAGCCTTTCTGCAGAGGCGCTTTGTAGCTTGAGGAACTTGTTGGAGGGTAGTGCAAGCACCTAA 1188 0.4689 MVAEADLMRPQSTPALNVQCFPNGANICEIEDAAATTPPSFDRVRASPLASAELLSSQEDIKAADGISNAALDSAVLQFVPTIRSGSFADIGPRRYMEDEHIRIDDLSSHMGSLYTFPEPSAFYGVFDGHGGPEAAAYIQKNVMRFFFEDANFPQTSEVDNVFLQEAENSLRKSFLLADLALADDCSVSNSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPAERRRVEELGGHVDDGYLNGVLSVSRALGDWDMKFPRGSPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMTSQQAVSVVRRSMRRYYDPERSARDLVMEALRLSTFDNLTVIVVCFSSNSIDHREPSPTRQRKLRCCSLSAEALCSLRNLLEGSAST 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0274 395 SMART PP2C_4 74 352 IPR001932 -
Lele16g0274 395 CDD PP2Cc 83 354 IPR001932 -
Lele16g0274 395 ProSiteProfiles PPM-type phosphatase domain profile. 84 354 IPR001932 -
Lele16g0274 395 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Lele16g0274 395 Pfam Protein phosphatase 2C 94 346 IPR001932 -
Lele16g0274 395 PANTHER PROTEIN PHOSPHATASE 2C 75 352 IPR015655 GO:0004722|GO:0006470
Lele16g0274 395 SUPERFAMILY PP2C-like 79 355 IPR036457 -
Lele16g0274 395 Gene3D - 74 362 IPR036457 -
Lele16g0274 395 FunFam Probable protein phosphatase 2C 22 68 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0274 Lele-ChrLele16 1512218 1514701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0274 97 391 PP2C-type Phosphatase Gene Family AT3G62260 69.595 1.54e-151 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele16g0274 PP2C 2.1e-63 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2151 13 28215795 28221106 Lele16g0274 16 1512218 1514701 hybridization
Lele14g2083 14 26544650 26547126 Lele16g0274 16 1512218 1514701 hybridization