Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0272 ATGCAGATCTTTGTGAAAACTCTTACAGGTAAGACGATAACCTTAGAGGTTGAGTCGTCGGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAACAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGACGAACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGCCTCCGTGGGGGTGCCAAGAAGCGTAAGAAGAAGACTTACACAAAGCCCAAGAAGATTAAGCACAAGAAGAAGAAGGTGAAGCTCGCTGTCCTACAGTTTTACAAAGTCGATGGTTCTGGGAAGGTTCAGAGGCTGAGGAAGGAGTGCCCGAATGCTGAATGCGGAGCTGGCACCTTTATGGCCAATCACGCTGATAGGCACTATTGTGGTAAGTGCGGCCTCACCTATGTTTACCAGAAAGCCGGCGTTGAAGGGATATTTATGTTGTTGTTTGCTGTTTTCCACATTGATATGAAAATGAGCAGCAGTTGTCATTCATTTATCATTATGGGCTTTTTGGTGTATGCTATGAATTGGCTTATCACGGGAGTGAAGCGGGGTAGCGTCTTAAGTTCTGTTTTGATGATTGAATCAAGCAAGGCGAAGGGTGTTGTGGTTTGGAAACCATCCTGCACAGCAAGACAGGGGGCCGCACCACCGGATTAA 702 0.4786 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDGSGKVQRLRKECPNAECGAGTFMANHADRHYCGKCGLTYVYQKAGVEGIFMLLFAVFHIDMKMSSSCHSFIIMGFLVYAMNWLITGVKRGSVLSSVLMIESSKAKGVVVWKPSCTARQGAAPPD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0272 233 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lele16g0272 233 Gene3D - 81 154 IPR038582 -
Lele16g0272 233 Gene3D - 1 80 - -
Lele16g0272 233 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lele16g0272 233 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Lele16g0272 233 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele16g0272 233 CDD Ubl_ubiquitin 1 76 - -
Lele16g0272 233 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lele16g0272 233 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lele16g0272 233 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele16g0272 233 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lele16g0272 233 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Lele16g0272 233 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Lele16g0272 233 PANTHER UBIQUITIN 1 89 - -
Lele16g0272 233 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Lele16g0272 233 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0272 Lele-ChrLele16 1505258 1506919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0272 1 156 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.154 1.82e-91 264